LOC117597008


Basic Information

Item Value
gene id LOC117597008
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33037061 ~ 33037706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597008
tattcatgtgtctgtggctttcactaggtgactccgtgccagattcaatacagccactttcccctcgtgaagttgtaggtgaaggtgatgatgttactctgtcctgcaactACACAACAAGTGATAGAGCAAACACCTACCTGCAGTGGTACAggcaatatccaaaatctaaacctgagttcctcCTTTACATCACTCcaagtggatttaaaaatgatCCTATTTCACCACATCTGTCTGCTAAAGTTCCTGGAGATAaccgagtggatctgctcatctcccctgctgctgtatcagattctgcactatactactgtgctctggcgcccacagtgacaggaaatccaactgcactgtacaaaaacttcaACACAGTTTTGTTCTTCTGAAGGGAGAGCAAATGCAAAGTTCAATAATTTACACCCCTTCAaacctctctatctctctatctctctttatatttgttattatacagttgttc

Function

GO:

id name namespace
GO:0048518 positive regulation of biological process biological_process
GO:0006508 proteolysis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597008 True 481 V_segment 0.42 2 33037061 33037706

Neighbor

gene id symbol gene type direction distance location
LOC117597007 NA coding downstream 3400 33033018 ~ 33033661 (-)
LOC117597142 NA coding downstream 40169 32996356 ~ 32996892 (-)
LOC117597141 NA coding downstream 59361 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 191791 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 201339 32835039 ~ 32835722 (-)
c4h14orf119 LOC108267721 coding upstream 93381 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 128236 33165942 ~ 33168027 (-)
G74720 NA non-coding downstream 5635 33031042 ~ 33031426 (-)
G74717 NA non-coding downstream 11215 33025421 ~ 33025846 (-)
LOC117596966 NA non-coding downstream 164038 32871746 ~ 32873023 (-)
G74702 NA non-coding downstream 174402 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 185686 32849927 ~ 32851375 (-)
G74731 NA non-coding upstream 46692 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 70423 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 77038 33114744 ~ 33114997 (-)
G74744 NA non-coding upstream 84886 33122592 ~ 33122959 (-)
G74748 NA non-coding upstream 87961 33125667 ~ 33125874 (-)
LOC117597177 NA other downstream 65548 32971004 ~ 32971513 (-)
LOC117597170 NA other downstream 86567 32949834 ~ 32950494 (-)
LOC117597171 NA other downstream 89903 32946134 ~ 32947158 (-)
G74703 NA other downstream 168595 32865946 ~ 32868466 (-)
LOC117596929 NA other downstream 371641 32661892 ~ 32665420 (-)
LOC117597193 NA other upstream 19792 33057498 ~ 33058362 (-)
LOC117597189 NA other upstream 44491 33082197 ~ 33083322 (-)
LOC117596990 NA other upstream 52500 33090206 ~ 33091128 (-)
LOC117597195 NA other upstream 61045 33098751 ~ 33099488 (-)
LOC117597204 NA other upstream 63428 33101134 ~ 33101640 (-)

Expression


Co-expression Network