LOC117597009


Basic Information

Item Value
gene id LOC117597009
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33034903 ~ 33042101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597009
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcaaataCAAACCCAGCAGTGCTACAGGAAATtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttcaaaatggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttgacaataataatgataataaacgagtggatctgctcatctcctctgctgctatatcagactctgcactatactactgtgctctg
>TU88550
accattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgatgatgttactctgtcctgcaaataCAAACCCAGCAGTGCTACAGGAAATtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttcaaaatggagctctgagtcccaaCCCTcccccaagaatgtctgctaaagttgacaataataatgataataaacgagtggatctgctcatctcctctgctgctatatcagactctgcactatactactgtgctctgc

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597009 False 345 V_segment 0.42 2 33034904 33035413
TU88550 True 356 TUCP 0.42 2 33034903 33042101

Neighbor

gene id symbol gene type direction distance location
LOC117597007 NA coding downstream 1242 33033018 ~ 33033661 (-)
LOC117597142 NA coding downstream 38011 32996356 ~ 32996892 (-)
LOC117597141 NA coding downstream 57203 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 189633 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 199181 32835039 ~ 32835722 (-)
c4h14orf119 LOC108267721 coding upstream 88986 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 123841 33165942 ~ 33168027 (-)
G74720 NA non-coding downstream 3477 33031042 ~ 33031426 (-)
G74717 NA non-coding downstream 9057 33025421 ~ 33025846 (-)
LOC117596966 NA non-coding downstream 161880 32871746 ~ 32873023 (-)
G74702 NA non-coding downstream 172244 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 183528 32849927 ~ 32851375 (-)
G74731 NA non-coding upstream 42297 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 66028 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 72643 33114744 ~ 33114997 (-)
G74744 NA non-coding upstream 80491 33122592 ~ 33122959 (-)
G74748 NA non-coding upstream 83566 33125667 ~ 33125874 (-)
LOC117597177 NA other downstream 63390 32971004 ~ 32971513 (-)
LOC117597170 NA other downstream 84409 32949834 ~ 32950494 (-)
LOC117597171 NA other downstream 87745 32946134 ~ 32947158 (-)
G74703 NA other downstream 166437 32865946 ~ 32868466 (-)
LOC117596929 NA other downstream 369483 32661892 ~ 32665420 (-)
LOC117597193 NA other upstream 15397 33057498 ~ 33058362 (-)
LOC117597189 NA other upstream 40096 33082197 ~ 33083322 (-)
LOC117596990 NA other upstream 48105 33090206 ~ 33091128 (-)
LOC117597195 NA other upstream 56650 33098751 ~ 33099488 (-)
LOC117597204 NA other upstream 59033 33101134 ~ 33101640 (-)

Expression


Co-expression Network