LOC117597010


Basic Information

Item Value
gene id LOC117597010
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31870518 ~ 31871874 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597010
ATCTACTTCTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGACTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACGTGTCACACAAGCTGAACCACCTCATCCACGATTATCTATGAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGATGGAGctatttacatctttacattCACTTCTTCAGCTCTCTGTCTATGATGTCAGATTAACCATCATCTTTGCACCGATGAGACGGTAAAACCTTCACAAAACATCTGCAGTGACTGACTCTGTAGTGTACAGCTGTGTCATGGAGCCCACAGTGACAGCAAACCCAGATACATAGTACAAAGTGTTTCATATGACAGATTCATATTATACAAAGGGTTTTCTCAGTTCCTCATCACTGCTGCAGTTATAGATTTTCCCGAGCCGTCCCTATGGCCTGAGAATGTCATTCATCAATCCCAATAATCAGAGCTTCCTTTGTATGAGGAGTTGTTAGCTCAGCTACAACCTAGTCTGTTGGTTAACTGCTCATTATCTCCTTCTTGCACTGATCACTGACTTCTGAAGACCATGCTGTCAGGTTCCCCAGGACAGGAACATGGACCCAGTGGACACTGTGGATCAGAACCCCAGTAAACACTCTGTTCTGGACATTCTTGCAGCATTACAGCTACAACATTACTGCTACATGTGATTTCTTTGCTCTATTCTAGTTT
>TU88351
GTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGACTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACGTGTCACACAAGCTGAACCACCTCATCCACGATTATCTATGAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597010 True 1239 V_segment 0.43 2 31870518 31871874
TU88351 False 363 TUCP 0.44 2 31871159 31871639

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 142966 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 325884 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 337260 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 368140 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 506247 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 951684 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 963165 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 972227 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1100911 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1124482 32996356 ~ 32996892 (-)
LOC113540068 NA non-coding downstream 510 31867082 ~ 31870008 (-)
G74458 NA non-coding downstream 84761 31736292 ~ 31785757 (-)
G74457 NA non-coding downstream 114214 31753121 ~ 31756304 (-)
G74479 NA non-coding downstream 125056 31744351 ~ 31745462 (-)
G74417 NA non-coding downstream 219934 31567051 ~ 31650584 (-)
G74553 NA non-coding upstream 21977 31893851 ~ 31901557 (-)
LOC117597178 NA non-coding upstream 36774 31908648 ~ 31909914 (-)
LOC117597180 NA non-coding upstream 59431 31931305 ~ 31932063 (-)
LOC113540655 NA non-coding upstream 239712 32111586 ~ 32112411 (-)
LOC117595679 NA non-coding upstream 253698 32125572 ~ 32126462 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 593269 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 1094699 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 1119550 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1847993 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 2139661 29724588 ~ 29730857 (-)
G74547 NA other upstream 2435 31874309 ~ 31874827 (-)
G74550 NA other upstream 8160 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 11069 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 33752 31905626 ~ 31910974 (-)
G74607 NA other upstream 194938 32066812 ~ 32067337 (-)

Expression


Co-expression Network