LOC117597011


Basic Information

Item Value
gene id LOC117597011
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31882943 ~ 31883607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597011
ttcatgtgtctgtggctttcactaggtgactccatggcaaattcaatacagccacttttcACAACTCCtaaagttgtagatgaaggtgataatgttactctgtcctgcagatACACAACCAGCAGTGCTATAGCAAACAACTACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctttatatttctcaacGTGGAGATCTGAGTCCCAACCCTCCCtcaagaatgtctgctaaagttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctggcgcccacagtgacaggaaatccaactgcactgtacaaaaactacagTTTTATTCTACAGTGTTGAGCCTCATCAGCAGAATGAAGagtctacacacagagagaaggtcggatttgtttaaagtgagaatgtgaaataatgatttaacatttcagttttcttcctttcat

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597011 True 500 V_segment 0.41 2 31882943 31883607

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 155391 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 338309 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 349685 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 380565 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 518672 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 939951 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 951432 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 960494 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1089178 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1112749 32996356 ~ 32996892 (-)
LOC113540068 NA non-coding downstream 12935 31867082 ~ 31870008 (-)
G74458 NA non-coding downstream 97186 31736292 ~ 31785757 (-)
G74457 NA non-coding downstream 126639 31753121 ~ 31756304 (-)
G74479 NA non-coding downstream 137481 31744351 ~ 31745462 (-)
G74417 NA non-coding downstream 232359 31567051 ~ 31650584 (-)
G74553 NA non-coding upstream 10244 31893851 ~ 31901557 (-)
LOC117597178 NA non-coding upstream 25041 31908648 ~ 31909914 (-)
LOC117597180 NA non-coding upstream 47698 31931305 ~ 31932063 (-)
LOC113540655 NA non-coding upstream 227979 32111586 ~ 32112411 (-)
LOC117595679 NA non-coding upstream 241965 32125572 ~ 32126462 (-)
G74550 NA other downstream 2387 31880034 ~ 31880556 (-)
G74547 NA other downstream 8116 31874309 ~ 31874827 (-)
LOC117597010 NA other downstream 11069 31870518 ~ 31871874 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 605694 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 1107124 30773449 ~ 30775819 (-)
LOC117597121 NA other upstream 22019 31905626 ~ 31910974 (-)
G74607 NA other upstream 183205 32066812 ~ 32067337 (-)
LOC117596957 NA other upstream 190776 32074383 ~ 32113455 (-)
LOC117596961 NA other upstream 248344 32131951 ~ 32132467 (-)
LOC117596956 NA other upstream 260852 32144459 ~ 32144943 (-)

Expression


Co-expression Network