LOC117597121


Basic Information

Item Value
gene id LOC117597121
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31905626 ~ 31910974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597121
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgatgatgttactctgtcctgcaactACACAACCACCAGTACTGCAGCAGGCACCTACCTGcactggtacagacaatatccagaatctaaacctgagttccttctgTACATCACTGGAAGTGGACTTAAAGGTGACCCTATTTCACCACATCTATCTGCTGAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctcTAACGGGGGGAAACCGATCATCTTTACAGCGTCTTCAAATACATTCAATCACTGGTTATGgaaaactgctgcatcagatctAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597121 True 423 V_segment 0.44 4 31905626 31910974

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 178074 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 360992 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 372368 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 403248 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 541355 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 912584 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 924065 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 933127 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1061811 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1085382 32996356 ~ 32996892 (-)
G74553 NA non-coding downstream 4069 31893851 ~ 31901557 (-)
LOC113540068 NA non-coding downstream 35618 31867082 ~ 31870008 (-)
G74458 NA non-coding downstream 119869 31736292 ~ 31785757 (-)
G74457 NA non-coding downstream 149322 31753121 ~ 31756304 (-)
G74479 NA non-coding downstream 160164 31744351 ~ 31745462 (-)
LOC117597180 NA non-coding upstream 20331 31931305 ~ 31932063 (-)
LOC113540655 NA non-coding upstream 200612 32111586 ~ 32112411 (-)
LOC117595679 NA non-coding upstream 214598 32125572 ~ 32126462 (-)
G74619 NA non-coding upstream 253080 32164054 ~ 32164414 (-)
G74622 NA non-coding upstream 289391 32200365 ~ 32200804 (-)
LOC117597011 NA other downstream 22019 31882943 ~ 31883607 (-)
G74550 NA other downstream 25070 31880034 ~ 31880556 (-)
G74547 NA other downstream 30799 31874309 ~ 31874827 (-)
LOC117597010 NA other downstream 33752 31870518 ~ 31871874 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 628377 31247060 ~ 31277249 (-)
G74607 NA other upstream 155838 32066812 ~ 32067337 (-)
LOC117596957 NA other upstream 163409 32074383 ~ 32113455 (-)
LOC117596961 NA other upstream 220977 32131951 ~ 32132467 (-)
LOC117596956 NA other upstream 233485 32144459 ~ 32144943 (-)
G74615 NA other upstream 238221 32149195 ~ 32149797 (-)

Expression


Co-expression Network