LOC117597123


Basic Information

Item Value
gene id LOC117597123
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31970934 ~ 31972279 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597123
ttcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCtaaagttgtagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTAGCATATACAATgtgcagtggtacagacaatatccaaaatctaaacccgAGTTTGTTCTCTATATTACTCCAAGTGGAGATCTGAGTTCCAGCAGACCtccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtAAAAGACAAGTTCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597123 True 354 V_segment 0.42 3 31970934 31972279

Neighbor

gene id symbol gene type direction distance location
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 217267 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 264665 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 286467 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 360737 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 376247 31587261 ~ 31594687 (+)
LOC113540131 NA coding downstream 109640 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 344709 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 363809 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 366032 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 368216 32340495 ~ 32341411 (+)
LOC117597174 NA non-coding upstream 24392 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 107777 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 123068 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 227839 31734656 ~ 31743095 (+)
G74370 NA non-coding upstream 263498 31707228 ~ 31707436 (+)
G74573 NA non-coding downstream 235082 32207361 ~ 32207824 (+)
G74578 NA non-coding downstream 311929 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 346153 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 560567 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 570646 32542925 ~ 32553304 (+)
LOC117596936 NA other upstream 2977 31967199 ~ 31967957 (+)
LOC117597122 NA other upstream 5798 31960869 ~ 31965136 (+)
LOC113540067 NA other upstream 194136 31759889 ~ 31776798 (+)
c4h22orf39 c7h22orf39 other upstream 617790 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 873005 31061730 ~ 31097929 (+)
LOC117597124 NA other downstream 2061 31974340 ~ 31975068 (+)
LOC117596940 NA other downstream 15116 31987395 ~ 32043153 (+)
LOC117596930 NA other downstream 62520 32034799 ~ 32035593 (+)
LOC117596932 NA other downstream 240980 32213259 ~ 32214313 (+)
LOC117597126 NA other downstream 275639 32247918 ~ 32261238 (+)

Expression


Co-expression Network