LOC117597126


Basic Information

Item Value
gene id LOC117597126
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32247918 ~ 32261238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597126
tcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTggagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttgaaagtgGAGATATGAGTCCCAACCCTcccccaagaatgtctgctaaacTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgGTGTTGAAGGCCGTAGCTGACACCATCTGCACCGGAATCCAACACAGCAAACATCAGCTCCCAATAAGACACAACATCGCCTTTGTCAGAGCAGGAGGAAAACCTCAGGTGGAGATCAGGGCCTCAACTGGGCTGCTAGCCTCAGCTCAGGACTGGCAGCTGAAGGTTGACCTAGTGACCGCAATGAGGTGGGCTGTAGGGGCTTTGCAGGGCAATCTCTACATCAGACACTCAGCTTCCTTGGCACCAGAGGGCTGCAGGAAAGAAGAGCCACCAAGAACATCACCAAAGCTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597126 True 638 V_segment 0.48 3 32247918 32261238

Neighbor

gene id symbol gene type direction distance location
LOC113540131 NA coding upstream 142627 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 494251 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 541649 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 563451 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 637721 31596514 ~ 31610197 (+)
LOC117597128 NA coding downstream 55750 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 74850 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 77073 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 79257 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 94758 32355996 ~ 32356585 (+)
G74573 NA non-coding upstream 40094 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 301376 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 384761 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 400052 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 504823 31734656 ~ 31743095 (+)
G74578 NA non-coding downstream 22970 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 57194 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 271608 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 281687 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 299025 32560263 ~ 32560769 (+)
LOC117596932 NA other upstream 33605 32213259 ~ 32214313 (+)
LOC117596940 NA other upstream 204765 31987395 ~ 32043153 (+)
LOC117596930 NA other upstream 212325 32034799 ~ 32035593 (+)
LOC117597124 NA other upstream 272850 31974340 ~ 31975068 (+)
LOC117597123 NA other upstream 275639 31970934 ~ 31972279 (+)
LOC117597127 NA other downstream 8106 32269344 ~ 32272134 (+)
LOC117596951 NA other downstream 12797 32274035 ~ 32274523 (+)
LOC117596933 NA other downstream 18776 32280014 ~ 32280776 (+)
G74577 NA other downstream 18979 32280217 ~ 32295365 (+)
LOC117596937 NA other downstream 33003 32294241 ~ 32295566 (+)

Expression


Co-expression Network