LOC117597127


Basic Information

Item Value
gene id LOC117597127
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32269344 ~ 32272134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597127
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccacttttcACAACTCCtaaagttgtagatgaaggtgttaacgttactctgtcctgcagatACGAAACTACCAGTAGTGCAGCAAACACCTACCTGcactggtacagacaatatccaaaatctaaacctgagttcctaCTTTACATCACTGCAAATGGCCGTAAAAGTGACCCTCTTCCATCACGTCTGTCTGCTGAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtAGACgtagcacagtaatacagagtcagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597127 True 369 V_segment 0.43 3 32269344 32272134

Neighbor

gene id symbol gene type direction distance location
LOC113540131 NA coding upstream 164053 32081919 ~ 32105291 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 515677 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 563075 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 584877 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 659147 31596514 ~ 31610197 (+)
LOC117597128 NA coding downstream 44854 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 63954 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 66177 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 68361 32340495 ~ 32341411 (+)
LOC117596942 NA coding downstream 83862 32355996 ~ 32356585 (+)
G74573 NA non-coding upstream 61520 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 322802 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 406187 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 421478 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 526249 31734656 ~ 31743095 (+)
G74578 NA non-coding downstream 12074 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 46298 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 260712 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 270791 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 288129 32560263 ~ 32560769 (+)
LOC117597126 NA other upstream 8106 32247918 ~ 32261238 (+)
LOC117596932 NA other upstream 55031 32213259 ~ 32214313 (+)
LOC117596940 NA other upstream 226191 31987395 ~ 32043153 (+)
LOC117596930 NA other upstream 233751 32034799 ~ 32035593 (+)
LOC117597124 NA other upstream 294276 31974340 ~ 31975068 (+)
LOC117596951 NA other downstream 1901 32274035 ~ 32274523 (+)
LOC117596933 NA other downstream 7880 32280014 ~ 32280776 (+)
G74577 NA other downstream 8083 32280217 ~ 32295365 (+)
LOC117596937 NA other downstream 22107 32294241 ~ 32295566 (+)
LOC117596941 NA other downstream 313937 32586071 ~ 32586666 (+)

Expression


Co-expression Network