LOC117597129


Basic Information

Item Value
gene id LOC117597129
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32362641 ~ 32364748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597129
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaactACAAACCCAGCAGTACTGCAACAAACAACTACCTGAactggtacagacaatatccagaatctaaacctgagttccttctttatatttatcaaactggagctctgagtcccaaCAGAcccccaagaatgtctgctGAAGTTGatgataataaagataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtTTAGAATATAGCTTTGTGTTGACTGTTGACAGCTGGGTCGCCTGGGTGAGGGTGTCTGATGATCCAAGTCCTGAAACACCCTATGACCCCGAGTtcatcactgatgatgtgtccaAGTCGCACCATCTGGTGTTTCAACAAACaagaaactataaaataaatgattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597129 True 510 V_segment 0.42 3 32362641 32364748

Neighbor

gene id symbol gene type direction distance location
LOC117596942 NA coding upstream 6056 32355996 ~ 32356585 (+)
LOC117596931 NA coding upstream 21230 32340495 ~ 32341411 (+)
LOC117596952 NA coding upstream 23830 32338311 ~ 32338811 (+)
LOC117596959 NA coding upstream 26059 32336088 ~ 32336582 (+)
LOC117597128 NA coding upstream 42734 32316988 ~ 32319907 (+)
LOC117597130 NA coding downstream 3131 32367879 ~ 32369140 (+)
LOC117596935 NA coding downstream 5111 32369859 ~ 32370818 (+)
LOC117596960 NA coding downstream 14675 32379423 ~ 32379917 (+)
LOC117596953 NA coding downstream 32158 32396906 ~ 32397397 (+)
LOC117597131 NA coding downstream 39800 32404548 ~ 32405101 (+)
G74580 NA non-coding upstream 22567 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 66107 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 154817 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 416099 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 499484 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 168098 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 178177 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 195515 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 342345 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 373355 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 31796 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 67075 32294241 ~ 32295566 (+)
G74577 NA other upstream 67276 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 81865 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 88118 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 221323 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 230088 32594836 ~ 32596942 (+)
G74651 NA other downstream 323569 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 324678 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 328855 32693603 ~ 32694103 (+)

Expression


Co-expression Network