LOC117597130


Basic Information

Item Value
gene id LOC117597130
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32367879 ~ 32369140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597130
tattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgataatgttactctgtcctgcagatACGAAACAAGAGCTACAGGAAACACCaacctgcagtggtacagacaatgtccaaaatctaaacctgagttccttctttatatttatatgggAACTCTGAGTCCCAACCCTcccccaagaatgtctgctaaagttcctggagataaacgagtggatctgctcatctcctctgctgctgtatcagaCTTTAGTCGACCCTCTAGGACCGGATTTTGA

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597130 True 326 V_segment 0.45 3 32367879 32369140

Neighbor

gene id symbol gene type direction distance location
LOC117597129 NA coding upstream 3131 32362641 ~ 32364748 (+)
LOC117596942 NA coding upstream 11294 32355996 ~ 32356585 (+)
LOC117596931 NA coding upstream 26468 32340495 ~ 32341411 (+)
LOC117596952 NA coding upstream 29068 32338311 ~ 32338811 (+)
LOC117596959 NA coding upstream 31297 32336088 ~ 32336582 (+)
LOC117596935 NA coding downstream 719 32369859 ~ 32370818 (+)
LOC117596960 NA coding downstream 10283 32379423 ~ 32379917 (+)
LOC117596953 NA coding downstream 27766 32396906 ~ 32397397 (+)
LOC117597131 NA coding downstream 35408 32404548 ~ 32405101 (+)
LOC117596954 NA coding downstream 107132 32476272 ~ 32476763 (+)
G74580 NA non-coding upstream 27805 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 71345 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 160055 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 421337 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 504722 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 163706 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 173785 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 191123 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 337953 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 368963 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 37034 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 72313 32294241 ~ 32295566 (+)
G74577 NA other upstream 72514 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 87103 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 93356 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 216931 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 225696 32594836 ~ 32596942 (+)
G74651 NA other downstream 319177 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 320286 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 324463 32693603 ~ 32694103 (+)

Expression


Co-expression Network