LOC117597131


Basic Information

Item Value
gene id LOC117597131
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32404548 ~ 32405101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597131
tattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAATCAAAAGTGCTACAGGAAACACCaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaaatggtGGTCTGAGTCCCAACCCTcccccaagaatgtctgctaCATTTCCCGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcccacagtgacaggaaatccaactgcactgttcAAAAACTTCAACACAGTTTTGTTATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597131 True 389 V_segment 0.44 2 32404548 32405101

Neighbor

gene id symbol gene type direction distance location
LOC117596953 NA coding upstream 7151 32396906 ~ 32397397 (+)
LOC117596960 NA coding upstream 24631 32379423 ~ 32379917 (+)
LOC117596935 NA coding upstream 33730 32369859 ~ 32370818 (+)
LOC117597130 NA coding upstream 35408 32367879 ~ 32369140 (+)
LOC117597129 NA coding upstream 39800 32362641 ~ 32364748 (+)
LOC117596954 NA coding downstream 71171 32476272 ~ 32476763 (+)
LOC117596939 NA coding downstream 87857 32492958 ~ 32493624 (+)
LOC117597132 NA coding downstream 119776 32524877 ~ 32527660 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 769373 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 852128 33257229 ~ 33259292 (+)
G74580 NA non-coding upstream 64474 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 108014 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 196724 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 458006 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 541391 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 127745 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 137824 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 155162 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 301992 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 333002 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 73703 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 108982 32294241 ~ 32295566 (+)
G74577 NA other upstream 109183 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 123772 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 130025 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 180970 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 189735 32594836 ~ 32596942 (+)
G74651 NA other downstream 283216 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 284325 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 288502 32693603 ~ 32694103 (+)

Expression


Co-expression Network