LOC117597132


Basic Information

Item Value
gene id LOC117597132
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32524877 ~ 32527660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597132
ATGTCTCCATCTGAGCTTTTGATAACAATATTACTcctcttcttgcttttcttcactATTGCTGATATCGcacAGGCTGCAGACAACAGCATTGAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTAACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAATCCACAGAACGTGTCACTAAAGCTAAACCACCTCATCCACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacacactGTGATGAAAACGGAGACTTCGGACTCTCGGATGATGGCTGTATCTGGGAGGGATTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597132 True 462 V_segment 0.45 4 32524877 32527660

Neighbor

gene id symbol gene type direction distance location
LOC117596939 NA coding upstream 31253 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 48114 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 119776 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 127480 32396906 ~ 32397397 (+)
LOC117596960 NA coding upstream 144960 32379423 ~ 32379917 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 646814 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 729569 33257229 ~ 33259292 (+)
G74580 NA non-coding upstream 184803 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 228343 32284208 ~ 32296534 (+)
G74573 NA non-coding upstream 317053 32207361 ~ 32207824 (+)
LOC117597174 NA non-coding upstream 578335 31946048 ~ 31946542 (+)
LOC117597031 NA non-coding upstream 661720 31859960 ~ 31863157 (+)
LOC117596964 NA non-coding downstream 5186 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 15265 32542925 ~ 32553304 (+)
LOC117596955 NA non-coding downstream 32603 32560263 ~ 32560769 (+)
G74655 NA non-coding downstream 179433 32707093 ~ 32707498 (+)
LOC117596969 NA non-coding downstream 210443 32738103 ~ 32740111 (+)
LOC117597173 NA other upstream 194032 31959022 ~ 32330845 (+)
LOC117596937 NA other upstream 229311 32294241 ~ 32295566 (+)
G74577 NA other upstream 229512 32280217 ~ 32295365 (+)
LOC117596933 NA other upstream 244101 32280014 ~ 32280776 (+)
LOC117596951 NA other upstream 250354 32274035 ~ 32274523 (+)
LOC117596941 NA other downstream 58411 32586071 ~ 32586666 (+)
LOC117597134 NA other downstream 67176 32594836 ~ 32596942 (+)
G74651 NA other downstream 160657 32688317 ~ 32688797 (+)
LOC117596965 NA other downstream 161766 32689426 ~ 32690032 (+)
LOC117596958 NA other downstream 165943 32693603 ~ 32694103 (+)

Expression


Co-expression Network