LOC117597136


Basic Information

Item Value
gene id LOC117597136
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32699777 ~ 32714861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597136
ATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacaTGTAGAGACATCAGAGACAATCTCAAATATACAACActggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGcagAGGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGTATCAGCTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTCTTGAAGCTACAGAAACTGTCACTAAAGCTGAACACCTTGACCCAAGACTATCCACCAGACTccataaaaaggaaaagaaagtagATCTGGAGATCTTTCCTGCTGcagtatcagactctgcactgtactactgcgccctgcaGATCCTGCAGCTGATCCAGTTGAGCTGGAATGAGGCAAGTCTTCTGGGGTTGTGGAAAGCCAGAGCACTTGACTACGCCTAA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597136 True 655 V_segment 0.43 3 32699777 32714861

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 172117 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 206153 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 223014 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 294676 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 302380 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 459613 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 542368 33257229 ~ 33259292 (+)
LOC117596955 NA non-coding upstream 139008 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 146473 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 166171 32532846 ~ 32533606 (+)
G74580 NA non-coding upstream 359703 32318432 ~ 32340074 (+)
G74578 NA non-coding upstream 403243 32284208 ~ 32296534 (+)
LOC117596969 NA non-coding downstream 23242 32738103 ~ 32740111 (+)
LOC117596944 NA non-coding downstream 165850 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 181943 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 200679 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 211755 32926616 ~ 32927014 (+)
LOC117596958 NA other upstream 5674 32693603 ~ 32694103 (+)
LOC117596965 NA other upstream 9745 32689426 ~ 32690032 (+)
G74651 NA other upstream 10980 32688317 ~ 32688797 (+)
LOC117597134 NA other upstream 102835 32594836 ~ 32596942 (+)
LOC117596941 NA other upstream 113111 32586071 ~ 32586666 (+)
LOC117596943 NA other downstream 93 32714954 ~ 32715523 (+)
LOC117597137 NA other downstream 6963 32721824 ~ 32736271 (+)
LOC117596925 NA other downstream 27404 32742265 ~ 32743137 (+)
LOC117597138 NA other downstream 30639 32745500 ~ 32747793 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 415182 33130043 ~ 33148431 (+)

Expression


Co-expression Network