LOC117597137


Basic Information

Item Value
gene id LOC117597137
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32721824 ~ 32736271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597137
TACTTCTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAGgtgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGagGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAGGCAGTGGACATGTCACTAAAGCTAAACCACCTCATCCACGaatgtctgctGAAGTTGatgataataaagataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtTTAGAATATAGCTTTGTGTTGACTGTTGACAGCTGGGTCGCCTGGGTGAGGGTGTCTGATGATCCAAGTCCTGAAACACCCTATGACCCCGGGTtcatcactgatgatgtgtccaAGTCGCACCATCTGGTGTTTCAACAAACaagaaactataaaataaatgattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597137 True 765 V_segment 0.41 4 32721824 32736271

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 194164 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 228200 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 245061 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 316723 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 324427 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 438203 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 520958 33257229 ~ 33259292 (+)
G74655 NA non-coding upstream 14326 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 161055 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 168520 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 188218 32532846 ~ 32533606 (+)
G74580 NA non-coding upstream 381750 32318432 ~ 32340074 (+)
LOC117596969 NA non-coding downstream 1832 32738103 ~ 32740111 (+)
LOC117596944 NA non-coding downstream 144440 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 160533 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 179269 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 190345 32926616 ~ 32927014 (+)
LOC117596949 NA other upstream 1360 32713173 ~ 32720464 (+)
LOC117596943 NA other upstream 6301 32714954 ~ 32715523 (+)
LOC117597136 NA other upstream 6963 32699777 ~ 32714861 (+)
LOC117596958 NA other upstream 27721 32693603 ~ 32694103 (+)
LOC117596965 NA other upstream 31792 32689426 ~ 32690032 (+)
LOC117596925 NA other downstream 5994 32742265 ~ 32743137 (+)
LOC117597138 NA other downstream 9229 32745500 ~ 32747793 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 393772 33130043 ~ 33148431 (+)

Expression


Co-expression Network