LOC117597138


Basic Information

Item Value
gene id LOC117597138
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32745500 ~ 32747793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597138
ATGAAAGCCATTAAAAGCAGCCACACCACTCCCAGTAGCAACCTTCTTAACCCTTTCAGGCACAGTGGCTGCTTAAAAGTGGGAGGAGCTAGATGTGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTTACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTATTATATCTTCAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTCCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGCAGCCCACAGtaacaggaaacacaactacacagtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTTGATTCAAATAAATTTTGCTTTTTCAATTTCCAGTCTTTGATGTTGGAATAACTTTGAATATCTATGCTGATTGTGCTAGAATAATCTCCATAGAAAATGTTAATCACCTTTCTGGATATtaagaaattttattatttcataaatgtaatTCTCATGCATCaggtctgttttattatttaaaccgAAAAACCCAAAATGTCCCAACAAATGTAGCTGTTATTTGTGGACAGaatttgtttagaaaaatatatgtttaagtGAAATGTTGTGAGTTGAATaagattgtgtttatttattagagcaACTACATATCATGAAGAATATTTCACATCTATTCatgctaaaatgtgtttaaataaaaaagggtCTTTACATTAGAATATGTTGttattgtataaaattaaaatcctaCTCAGTAAACATTACCTCTTCaggtaaataataaagataaatccactttaaatgcatttaaatagacTGTAGAGAGTTATggaagtgttgtgttttttaaagatcaGAATGGTGTGGGAACTGAATCGCTTTTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597138 True 1063 V_segment 0.36 4 32745500 32747793

Neighbor

gene id symbol gene type direction distance location
LOC117597132 NA coding upstream 217840 32524877 ~ 32527660 (+)
LOC117596939 NA coding upstream 251876 32492958 ~ 32493624 (+)
LOC117596954 NA coding upstream 268737 32476272 ~ 32476763 (+)
LOC117597131 NA coding upstream 340399 32404548 ~ 32405101 (+)
LOC117596953 NA coding upstream 348103 32396906 ~ 32397397 (+)
chd8 chd8,LOC108267737,LOC107738141,LOC107591376,LOC107704282 coding downstream 426681 33174474 ~ 33249659 (+)
gpr25 LOC108267152 coding downstream 509436 33257229 ~ 33259292 (+)
LOC117596969 NA non-coding upstream 5389 32738103 ~ 32740111 (+)
G74655 NA non-coding upstream 38002 32707093 ~ 32707498 (+)
LOC117596955 NA non-coding upstream 184731 32560263 ~ 32560769 (+)
LOC117597133 NA non-coding upstream 192196 32542925 ~ 32553304 (+)
LOC117596964 NA non-coding upstream 211894 32532846 ~ 32533606 (+)
LOC117596944 NA non-coding downstream 132918 32880711 ~ 32881365 (+)
G74672 NA non-coding downstream 149011 32896804 ~ 32924735 (+)
G74676 NA non-coding downstream 167747 32915540 ~ 32915973 (+)
LOC117596970 NA non-coding downstream 178823 32926616 ~ 32927014 (+)
G74686 NA non-coding downstream 276183 33023976 ~ 33024331 (+)
LOC117596925 NA other upstream 2363 32742265 ~ 32743137 (+)
LOC117597137 NA other upstream 9229 32721824 ~ 32736271 (+)
LOC117596949 NA other upstream 25036 32713173 ~ 32720464 (+)
LOC117596943 NA other upstream 29977 32714954 ~ 32715523 (+)
LOC117597136 NA other upstream 30639 32699777 ~ 32714861 (+)
mmp14b mmp14b,LOC108267723,LOC103041213,LOC108438939 other downstream 382250 33130043 ~ 33148431 (+)

Expression


Co-expression Network