LOC117597139


Basic Information

Item Value
gene id LOC117597139
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32810432 ~ 32811735 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597139
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgttaatgttactctgtcctgcaactACACAACCAGTTATACAAGCCCCTACCTGcactggtacagacaatatccaaaatctaaacctaaGTTCCTTCTCTACATCACTGGAAGTGGACTTAAAAGTGACCCTATTTCACCACATCTGTCTGCTAAAgttgatgataaaaataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctGATCCTGCAGCTGATCCAGTTGAGCTGGAATGA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597139 True 366 V_segment 0.43 3 32810432 32811735

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 1082880 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 1265798 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 1277174 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 1308054 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 1446161 31360647 ~ 31364271 (-)
LOC117597140 NA coding upstream 11823 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 23304 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 32366 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 161050 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 184621 32996356 ~ 32996892 (-)
LOC117596923 NA non-coding downstream 136 32809596 ~ 32810296 (-)
LOC117596938 NA non-coding downstream 6210 32803554 ~ 32804222 (-)
LOC117596927 NA non-coding downstream 32634 32776966 ~ 32777798 (-)
LOC117596968 NA non-coding downstream 41150 32767588 ~ 32769282 (-)
G74647 NA non-coding downstream 150471 32659532 ~ 32659961 (-)
LOC113540133 NA non-coding upstream 3694 32815429 ~ 32816281 (-)
LOC117596967 NA non-coding upstream 38192 32849927 ~ 32851375 (-)
G74702 NA non-coding upstream 50472 32862207 ~ 32862659 (-)
LOC117596966 NA non-coding upstream 60011 32871746 ~ 32873023 (-)
G74717 NA non-coding upstream 213686 33025421 ~ 33025846 (-)
LOC117596929 NA other downstream 145012 32661892 ~ 32665420 (-)
G74644 NA other downstream 165898 32644024 ~ 32644534 (-)
LOC117596950 NA other downstream 176721 32633213 ~ 32633711 (-)
LOC117596946 NA other downstream 606527 32203394 ~ 32203905 (-)
LOC117597125 NA other downstream 632308 32175807 ~ 32178124 (-)
G74703 NA other upstream 54211 32865946 ~ 32868466 (-)
LOC117597171 NA other upstream 134399 32946134 ~ 32947158 (-)
LOC117597170 NA other upstream 138099 32949834 ~ 32950494 (-)
LOC117597177 NA other upstream 159269 32971004 ~ 32971513 (-)
LOC117597009 NA other upstream 223168 33034903 ~ 33042101 (-)

Expression


Co-expression Network