LOC117597142


Basic Information

Item Value
gene id LOC117597142
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32996356 ~ 32996892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597142
GTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactactgCTGATATCGcagAGGCTGCAGACAACAGCATTGAACCAGAAAAACCCTCGAGATCTGTAACTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTGGAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAAATCAGTGGACGTGTCACACAAGCTGAACCACCTCATCCACGATTGTCTATGAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGacgcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597142 True 422 V_segment 0.45 2 32996356 32996892

Neighbor

gene id symbol gene type direction distance location
LOC117597141 NA coding downstream 18656 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 151086 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 160634 32835039 ~ 32835722 (-)
LOC117597140 NA coding downstream 170789 32823558 ~ 32825567 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 1268804 31710064 ~ 31727552 (-)
LOC117597007 NA coding upstream 36126 33033018 ~ 33033661 (-)
c4h14orf119 LOC108267721 coding upstream 134195 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 169050 33165942 ~ 33168027 (-)
LOC117596966 NA non-coding downstream 123333 32871746 ~ 32873023 (-)
G74702 NA non-coding downstream 133697 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 144981 32849927 ~ 32851375 (-)
LOC113540133 NA non-coding downstream 180075 32815429 ~ 32816281 (-)
LOC117597139 NA non-coding downstream 184621 32810432 ~ 32811735 (-)
G74717 NA non-coding upstream 28529 33025421 ~ 33025846 (-)
G74720 NA non-coding upstream 34150 33031042 ~ 33031426 (-)
G74731 NA non-coding upstream 87506 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 111237 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 117852 33114744 ~ 33114997 (-)
LOC117597177 NA other downstream 24843 32971004 ~ 32971513 (-)
LOC117597170 NA other downstream 45862 32949834 ~ 32950494 (-)
LOC117597171 NA other downstream 49198 32946134 ~ 32947158 (-)
G74703 NA other downstream 127890 32865946 ~ 32868466 (-)
LOC117596929 NA other downstream 330936 32661892 ~ 32665420 (-)
LOC117597009 NA other upstream 38011 33034903 ~ 33042101 (-)
LOC117597008 NA other upstream 40169 33037061 ~ 33037706 (-)
LOC117597193 NA other upstream 60606 33057498 ~ 33058362 (-)
LOC117597189 NA other upstream 85305 33082197 ~ 33083322 (-)
LOC117596990 NA other upstream 93314 33090206 ~ 33091128 (-)

Expression


Co-expression Network