LOC117597144


Basic Information

Item Value
gene id LOC117597144
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33120792 ~ 33125144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597144
tattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgatgatgttactctgtcctgcagatACAACACTTCCAATGCTGCAGCAACCACCTACCTGcactggtacagacaatatccaaaatctaaacctgagttcctaCTTTACATCACTGCAAATGGCCGTAAAAGTGACCCTCTTCCATCACGTCTGTTTCCTAAAgttgatgataaaaataaacaagtggatctgctcatctcctctgctgctgtatcagactctgcactatactaCTGA
>TU88570
aggtgactccatggcagattcaatacagccactttcccctcgtgtagttgtagatgaaggtgatgatgttactctgtcctgcagatACAACACTTCCAATGCTGCAGCAACCACCTACCTGcactggtacagacaatatccaaaatctaaacctgagttcctaCTTTACATCACTGCAAATGGCCGTAAAAGTGACCCTCTTCCATCACGTCTGTTTCCTAAAgttgatgataaaaataaacaagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcc
>TU88573
gaccattcatcatgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttttTACAGTCCTGAAGCTGTAGCTGAAAGTGATAATGTTATTCTGTCCTGCAGATATGAAACAAGTGGTAAAAACAATGACCTGTACTGGTACAggcaatatccaaaatctaaacttGAGTTCCTTCTCTATATTACTCAAACCGGAGCTCTGAGTCCCAACATCCCCAAAAGAATGTCTGCTGAAGTTCCTGGagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04145 Phagosome
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597144 False 323 V_segment 0.43 3 33120792 33125120
TU88570 False 309 TUCP 0.45 1 33121099 33121407
TU88573 True 347 TUCP 0.42 2 33124633 33125144

Neighbor

gene id symbol gene type direction distance location
LOC117597007 NA coding downstream 87131 33033018 ~ 33033661 (-)
LOC117597142 NA coding downstream 123900 32996356 ~ 32996892 (-)
LOC117597141 NA coding downstream 143092 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 275522 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 285070 32835039 ~ 32835722 (-)
c4h14orf119 LOC108267721 coding upstream 5943 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 40798 33165942 ~ 33168027 (-)
G74737 NA non-coding downstream 5795 33114744 ~ 33114997 (-)
G74736 NA non-coding downstream 12154 33108129 ~ 33108638 (-)
G74731 NA non-coding downstream 35956 33084398 ~ 33084836 (-)
G74720 NA non-coding downstream 89366 33031042 ~ 33031426 (-)
G74717 NA non-coding downstream 94946 33025421 ~ 33025846 (-)
G74748 NA non-coding upstream 523 33125667 ~ 33125874 (-)
LOC117597199 NA other downstream 10474 33109818 ~ 33110318 (-)
LOC117597204 NA other downstream 19152 33101134 ~ 33101640 (-)
LOC117597195 NA other downstream 21304 33098751 ~ 33099488 (-)
LOC117596990 NA other downstream 29664 33090206 ~ 33091128 (-)
LOC117597189 NA other downstream 37470 33082197 ~ 33083322 (-)

Expression


Co-expression Network