LOC117597174


Basic Information

Item Value
gene id LOC117597174
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31946048 ~ 31946542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597174
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccacgGCAGATCCAATAGAGCCACTTGTTACTCCTAAAGTTggagatgaaggtgatgaagttactctgtcctgcagctACAAAGGCTTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatattttggaaagtGGAGATATGAGTCCCACCAGACCCCCAAAAATGTCTGCTAAACTTCATGGagataaacgagtggatctgctcatctcccctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597174 True 336 V_segment 0.44 2 31946048 31946542

Neighbor

gene id symbol gene type direction distance location
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding upstream 192381 31732612 ~ 31753667 (+)
lamc2 LOC108267337 coding upstream 239779 31690175 ~ 31706269 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding upstream 261581 31619845 ~ 31684467 (+)
dhx9 dhx9 coding upstream 335851 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 351361 31587261 ~ 31594687 (+)
LOC113540131 NA coding downstream 135377 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 370446 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 389546 32336088 ~ 32336582 (+)
LOC117596952 NA coding downstream 391769 32338311 ~ 32338811 (+)
LOC117596931 NA coding downstream 393953 32340495 ~ 32341411 (+)
LOC117597031 NA non-coding upstream 82891 31859960 ~ 31863157 (+)
LOC113540254 NA non-coding upstream 98182 31778121 ~ 31847866 (+)
G74384 NA non-coding upstream 202953 31734656 ~ 31743095 (+)
G74370 NA non-coding upstream 238612 31707228 ~ 31707436 (+)
LOC117597165 NA non-coding upstream 399253 31544698 ~ 31546795 (+)
G74573 NA non-coding downstream 260819 32207361 ~ 32207824 (+)
G74578 NA non-coding downstream 337666 32284208 ~ 32296534 (+)
G74580 NA non-coding downstream 371890 32318432 ~ 32340074 (+)
LOC117596964 NA non-coding downstream 586304 32532846 ~ 32533606 (+)
LOC117597133 NA non-coding downstream 596383 32542925 ~ 32553304 (+)
LOC113540067 NA other upstream 169250 31759889 ~ 31776798 (+)
c4h22orf39 c7h22orf39 other upstream 592904 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 848119 31061730 ~ 31097929 (+)
G73944 NA other upstream 1178916 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1467755 30454757 ~ 30478293 (+)
LOC117597173 NA other downstream 12480 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 14327 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 20657 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 24392 31970934 ~ 31972279 (+)
LOC117597124 NA other downstream 27798 31974340 ~ 31975068 (+)

Expression


Co-expression Network