LOC117597177


Basic Information

Item Value
gene id LOC117597177
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32971004 ~ 32971513 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597177
atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatgccagattcaatacagccacttttcACAACTCCtaaagttgtagatgaaggtgaagatgttactctgtcctgcaactACACAACCAGCAGTGCAGCAGCAACCACCTACCTGcactggtacagacaatatccaaaatctaaacctgagttccttctgTACATCACTGCAAGTGGACAGAAAAGTGTCCCTATTTCACCACATCTGTCTTCTGAagttgatgataataataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctg

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597177 True 345 V_segment 0.43 2 32971004 32971513

Neighbor

gene id symbol gene type direction distance location
LOC117596934 NA coding downstream 125734 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 135282 32835039 ~ 32835722 (-)
LOC117597140 NA coding downstream 145437 32823558 ~ 32825567 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding downstream 1243452 31710064 ~ 31727552 (-)
LOC113540064 NA coding downstream 1426370 31538539 ~ 31544634 (-)
LOC117597141 NA coding upstream 1272 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 24843 32996356 ~ 32996892 (-)
LOC117597007 NA coding upstream 61505 33033018 ~ 33033661 (-)
c4h14orf119 LOC108267721 coding upstream 159574 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 194429 33165942 ~ 33168027 (-)
LOC117596966 NA non-coding downstream 97981 32871746 ~ 32873023 (-)
G74702 NA non-coding downstream 108345 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 119629 32849927 ~ 32851375 (-)
LOC113540133 NA non-coding downstream 154723 32815429 ~ 32816281 (-)
LOC117597139 NA non-coding downstream 159269 32810432 ~ 32811735 (-)
G74717 NA non-coding upstream 53908 33025421 ~ 33025846 (-)
G74720 NA non-coding upstream 59529 33031042 ~ 33031426 (-)
G74731 NA non-coding upstream 112885 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 136616 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 143231 33114744 ~ 33114997 (-)
LOC117597170 NA other downstream 20510 32949834 ~ 32950494 (-)
LOC117597171 NA other downstream 23846 32946134 ~ 32947158 (-)
G74703 NA other downstream 102538 32865946 ~ 32868466 (-)
LOC117596929 NA other downstream 305584 32661892 ~ 32665420 (-)
G74644 NA other downstream 326470 32644024 ~ 32644534 (-)
LOC117597009 NA other upstream 63390 33034903 ~ 33042101 (-)
LOC117597008 NA other upstream 65548 33037061 ~ 33037706 (-)
LOC117597193 NA other upstream 85985 33057498 ~ 33058362 (-)
LOC117597189 NA other upstream 110684 33082197 ~ 33083322 (-)
LOC117596990 NA other upstream 118693 33090206 ~ 33091128 (-)

Expression


Co-expression Network