LOC117597189


Basic Information

Item Value
gene id LOC117597189
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33082197 ~ 33083322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597189
ataaagtggtaactgaagagaaatgaatgaactgaGGGATCTGCTCAGAAAACCTTCTATTAGTGAACTGTGTAATATCATCATAAGATTCAGCAGAGTCAACAGAAACACAATGAACAACAACAAGCATCAGAAACTGTATTATcagcattttaattcattactttCATTAATGGATTGTTACACCACATATGTAATATCAGATGAAATGAGGTTTGAGTTTACAATATTATAAGTGGAAGTAGTGATGAAAGAATTTACATGACTAGGTGTAATTataagtgggtggagctagatGTGTAAGATACAGTTTAGACAGTTTCACAGAGACAACACTGCCATTCATATCTACTGCAAGAGAGACACTCACAACAACCATGTTactcttcctctctgttttcATAGCTCTTACTGATGTTGaggCTGTAGATGAGCTCATTAAACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGATGATGGTTCAAAAATTCACAGAACGTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTccataaaaaggaaaagaaagtagATCTGGAGATCTTTCCTGCTTcagtatcagactctgcactgtactactgcgccatggagcccacagtgacacaaaactcaaacacactgtacaaaaagtGAAGCTGGATTTTCTCTCAGGAGGGGGAGCCGTTTACCTGCTTCATTCaaatacacttttctttcttacttccCACACTTTCATATTTACTTGCCTTTGAATAACAACAATCACCTAATTCCATCATTTCTAGATGGGAAAATAGCTACATAAGACatataaataagtttaaaagCAATTATGCACACTATTATCAGTGA
>TU88557
CTACTGCAAGAGAGACACTCACAACAACCATGTTactcttcctctctgttttcATAGCTCTTACTGATGTTGcagaggCTGTAGATGAGCTCATTAAACCAGACCAAACCATCATACCTTCACGTGAAGGCAGCAGCaccacactgacctgcacataTGATGACTCGGCTCTCTATCTCCACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGATGATGGTTCAAAAATTCACAGAACGTGTCACTAAAGCTGAACAACTTGAC

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597189 True 959 V_segment 0.38 2 33082197 33083322
TU88557 False 272 lncRNA 0.45 2 33082539 33082974

Neighbor

gene id symbol gene type direction distance location
LOC117597007 NA coding downstream 48536 33033018 ~ 33033661 (-)
LOC117597142 NA coding downstream 85305 32996356 ~ 32996892 (-)
LOC117597141 NA coding downstream 104497 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 236927 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 246475 32835039 ~ 32835722 (-)
c4h14orf119 LOC108267721 coding upstream 47765 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 82620 33165942 ~ 33168027 (-)
G74720 NA non-coding downstream 50771 33031042 ~ 33031426 (-)
G74717 NA non-coding downstream 56351 33025421 ~ 33025846 (-)
LOC117596966 NA non-coding downstream 209174 32871746 ~ 32873023 (-)
G74702 NA non-coding downstream 219538 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 230822 32849927 ~ 32851375 (-)
G74731 NA non-coding upstream 1076 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 24807 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 31422 33114744 ~ 33114997 (-)
G74744 NA non-coding upstream 39270 33122592 ~ 33122959 (-)
G74748 NA non-coding upstream 42345 33125667 ~ 33125874 (-)
LOC117597193 NA other downstream 23835 33057498 ~ 33058362 (-)
LOC117597009 NA other downstream 40096 33034903 ~ 33042101 (-)
LOC117597008 NA other downstream 44491 33037061 ~ 33037706 (-)
LOC117597177 NA other downstream 110684 32971004 ~ 32971513 (-)
LOC117597170 NA other downstream 131703 32949834 ~ 32950494 (-)
LOC117596990 NA other upstream 6884 33090206 ~ 33091128 (-)
LOC117597195 NA other upstream 15429 33098751 ~ 33099488 (-)
LOC117597204 NA other upstream 17812 33101134 ~ 33101640 (-)
LOC117597199 NA other upstream 26496 33109818 ~ 33110318 (-)
LOC117597144 NA other upstream 37470 33120792 ~ 33125144 (-)

Expression


Co-expression Network