LOC117597193


Basic Information

Item Value
gene id LOC117597193
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 33057498 ~ 33058362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597193
ATACTGCCGTTTATATCTACTGCAAGAGAGACACTCACAACAATCATGTTcctcttctttgttttcataGCTGTTAAAAACATTGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTTTTATATCTTCAGAAACTGTCACTAAAGCTGAACAACTTGACCCAAGACTATCCACCAGACTCCGTAAAAATGAGAGGAAAGTATATCTGGAGATCTTTCCTGCTTCAGTATCAGACTCTTCACTGTACTACTGCGCCATGGAGCCCACAGtaacaggaaacacaactacactgtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTTGATTCAAATAAATTTTCCTTTTCCAATTTCCAGTCTTTGATGTTGGAATAACTTTGAATATCTATGCTGATTGTGCTAGAATAATCTCCATAGAAAATGTTAAATCACCATTCTGGATATtaagaaattttattatttcataaatttaaTTCTCATGCATCaggtctgttttattatttaaacccaaaaccCAAAATGTCCCAACAAATGTAGCTGTT
>TU88554
GTTTCACAGAGATACTGCCGTTTATATCTACTGCAAGAGAGACACTCACAACAATCATGTTcctcttctttgttttcataGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTT

Function

GO: NA

KEGG:

id description
K06553 VPREB, CD179a; pre-B lymphocyte gene

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597193 True 703 V_segment 0.38 2 33057498 33058351
TU88554 False 255 lncRNA 0.44 2 33057960 33058362

Neighbor

gene id symbol gene type direction distance location
LOC117597007 NA coding downstream 23837 33033018 ~ 33033661 (-)
LOC117597142 NA coding downstream 60606 32996356 ~ 32996892 (-)
LOC117597141 NA coding downstream 79798 32972785 ~ 32977700 (-)
LOC117596934 NA coding downstream 212228 32844101 ~ 32845270 (-)
LOC117596924 NA coding downstream 221776 32835039 ~ 32835722 (-)
c4h14orf119 LOC108267721 coding upstream 72725 33131087 ~ 33135775 (-)
cbln12 LOC108267329,LOC107591379,LOC107704284,LOC107557939,LOC103040079,LOC108438942,LOC107668986,LOC107738140 coding upstream 107580 33165942 ~ 33168027 (-)
G74720 NA non-coding downstream 26072 33031042 ~ 33031426 (-)
G74717 NA non-coding downstream 31652 33025421 ~ 33025846 (-)
LOC117596966 NA non-coding downstream 184475 32871746 ~ 32873023 (-)
G74702 NA non-coding downstream 194839 32862207 ~ 32862659 (-)
LOC117596967 NA non-coding downstream 206123 32849927 ~ 32851375 (-)
G74731 NA non-coding upstream 26036 33084398 ~ 33084836 (-)
G74736 NA non-coding upstream 49767 33108129 ~ 33108638 (-)
G74737 NA non-coding upstream 56382 33114744 ~ 33114997 (-)
G74744 NA non-coding upstream 64230 33122592 ~ 33122959 (-)
G74748 NA non-coding upstream 67305 33125667 ~ 33125874 (-)
LOC117597009 NA other downstream 15397 33034903 ~ 33042101 (-)
LOC117597008 NA other downstream 19792 33037061 ~ 33037706 (-)
LOC117597177 NA other downstream 85985 32971004 ~ 32971513 (-)
LOC117597170 NA other downstream 107004 32949834 ~ 32950494 (-)
LOC117597171 NA other downstream 110340 32946134 ~ 32947158 (-)
LOC117597189 NA other upstream 23835 33082197 ~ 33083322 (-)
LOC117596990 NA other upstream 31844 33090206 ~ 33091128 (-)
LOC117597195 NA other upstream 40389 33098751 ~ 33099488 (-)
LOC117597204 NA other upstream 42772 33101134 ~ 33101640 (-)
LOC117597199 NA other upstream 51456 33109818 ~ 33110318 (-)

Expression


Co-expression Network