eif2b5 (eif2b5,LOC107671691,LOC107567864,LOC107660395)


Basic Information

Item Value
gene id eif2b5
gene name eif2b5,LOC107671691,LOC107567864,LOC107660395
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 279982 ~ 300017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68164
aCTGCAGCCCAGTACTCCTCCCTCCTGCTGcctgtgagtctctctctctctctctctctctctctctctctctctgtacatcaCTGCAGCCCAGTACTCCTCCCTCCTGCTGcctgtgagtctctctctctctctctctctctctctctctctctctctctctctctctctgtacatcaCTGCAGCCCAGTACTCCTCCCTCCTGCTGcctgtgagtctctctctctctctctctctctctctctctctctctctctctctctgtacatcaCTGCAGCCCAGTACTCCTCCCTCCTGCTGcctttgttgaagAAGTGGGCTCCTGTGTTTAAGAACTACGTGAAGCGAGCTCaggatcacacacactgcctctcCACTCTGGAGGAGGTGTTCATGGAGCATGAAACATACTGGCCCGCCCTCGCCAAGgtgTTGATGAGTGTGTATCAGTTGGAGATTCTGGATGAGGATTCCATTATGCGCTGGTTCTCTCAGGGAGCGCAGACGGAGCGGAGTAAAACCCTGCGCAAGAACCCGGGGCTGCTGAAGTTCATCCAGTGGTTGGAGGAGGCCGAGGAGTCTTCAGAGGGAGACGACTGAACAGCgcatcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagcagaaCTGACTATCTCAGTAATTATTCATGCAAACAAGGGAAAGTGAtgttaacacacactgtgtgtttattagcaCTTAACACTGCTTTATGATGCTTTTGTAAATCTGCTTTAGCTGTGTGAGTTATTGTTACCATGGACACGACCTTTGACCCTGTGACCCTGATGTTAGCCCTGACTCGATGAATGGACCTGGGAGTGAAATATGATGTGTAATATTCCTACATTTTGATTGGCAGCTGTGAGACCTGTTTAAAGGCTGAAATGAAAgagagtgtgtttttatttatccagAGTTTGTACAGATCCTGGAAATGTCATGTGGAATATCAGAAGAGACATCTTCAGGGCTTTTACGCTTTCAGAGAAGGAATTCTGGGAATATTAACATGTCTTTAAGTGTCAATTCAGCTGGGATTTATTTCACCTGAAGTTATTATACTGCTCATTTTCAGACGCGACGCTTATTTAAGTGGTTCGTTCCGGTGGTTGCAGCAGATACTAATGAACATTTACCCTGCGTTCACGCTAGAGAGAAACAAAGCGACAGGTAATCGCTCATTGTCCATGATGTGGAGCTGTGATCCTGCGGCgcgtgtggtccgacgtttcctcagttccccgctcacaactttacttcctacctgcagttattTGAGAAGAAAACCTCCCCTCATTGTGGCttcatcttctcctgtcatGTACGAGCTCTCAGTAATGTGTAGAGtgacgtaaggaataaaaataaagcttggaaggaagtagcagagctCGTTTGTGCCTCTGGCGAGTGtgtgtagctagtacagttagcttgatttgctaatctaatctgagaatgaaGCTGAAGCCGAGAACTGAATTTCACACGgattagtgtgttattttaatgtgtgttaaaccagatgcagttaaaaaaaactgcaggccacacccacaagagacGAACCATAAtgagtttattcatttcagtacAGGAAAAGCATCGAATCGTTCACCTTTCTATAGAGTATAGTTATGAAAGATAGTTTACTATGAAAGTTACTTTAATCATAAAGAGTTTAATATTACTACAGATCAATCCCTTACAGTTTATTTTCCTCAATGAAAATACCAGTAAGTGATGATTAGTGCATTGTGACCCAGCTGCTAAAGGAAACATCCCACACCTGCACCAGTTCCCCAACACAAAAcattgattaattctctataacagcagctctgacagtagtgcagctgcaaatcacagggttatttatagttaatgcgctcgttctaatatgttatcgtttctatagcaacagctcattcacagg
>TU68285
ctctctttgtctctctctctctctctctctctctccctctctctctctctctctctgtctctcttcagaCTGAGGCGTAAACAGGAGAAGAACATCTCGGTGATGACGATGATTTTCAGAGAGTCGTCACCCGGCAACCGGACTCGCTGTGACGAGGATGACGTCATCGTTGCCGTAGATACCAAGAGTAACCGAGTGCTCCACTATCAGAAAACACAGGGACTGAACAAGATCCACTTCCCCGTGTGGCAGTGACGAGTTTGAGGTCCGTCATGACCTGCTGGACTGTCACATCAGTATCTGTTCCCCGCAGGTCGCTGAACTCTTCACTGATAACTTCGACTATCAGACCAGGAACGACTTCGTACGTGGGATTCTCGTCAACGAGGAGATTTTGGGGAATCAGATCCACATGTTTGTGAGTAAAGATGGCTACGGCGCACGCGTCTCCAACCTGCACATGTACGACTCTGTGTCCTGTGATCTGATTGGCCGCTGGGCTTATCCCATCACCCCTGAAGCTAACTTCTCAGATGAGGAGGGACGGACCTGCACGCACTCGCGCCACAACGTGTACCGTGAAGTGGGCGTCGGCCTGGGACACGGCAGCCTGATGGAGGAAAACGTTCTGATTGGACGAAACACGGTGATCGGGGCCAACTGCAGCCTATCAAACACCGTGATCGGGGCCAACTGTCTGATCGGCGACGGTGTGGTGTTGGacca
>XM_034303516.1
ATGGCCAGTATGAAACTGCAGAGAGTCTttgtcctctctctctctctctctctctctctcctctctctctctctctctctgtctctcttcagaCTGAGGCGTAAACAGGAGAAGAACATCTCGGTGATGACGATGATTTTCAGAGAGTCGTCACCCGGCAACCGGACTCGCTGTGACGAGGATGACGTCATCGTTGCCGTAGATACCAAGAGTAACCGAGTGCTCCACTATCAGAAAACACAGGGACTGAACAAGATCCACTTCCCCGTGaatattttcCACAGTGGCAGTGACGAGTTTGAGGTCCGTCATGACCTGCTGGACTGTCACATCAGTATCTGTTCCCCGCAGGTCGCTGAACTCTTCACTGATAACTTCGACTATCAGACCAGGAACGACTTCGTACGTGGGATTCTCGTCAACGAGGAGATTTTGGGGAATCAGATCCACATGTTTGTGAGTAAAGATGGCTACGGCGCACGCGTCTCCAACCTGCACATGTACGACTCTGTGTCCTGTGATCTGATTGGCCGCTGGGCTTATCCCATCACCCCTGAAGCTAACTTCTCAGATGAGGAGGGACGGACCTGCACGCACTCGCGCCACAACGTGTACCGTGAAGTGGGCGTCGGCCTGGGACACGGCAGCCTGATGGAGGAAAACGTTCTGATTGGACGAAACACGGTGATCGGGGCCAACTGCAGCCTATCAAACACCGTGATCGGGGCCAACTGTCTGATCGGCGACGGTGTGGTGTTGGaccacacatatatatatctgGAACAATGTTAAACACATCGGTGGCGGTGTGATTGGTTCACACAGTCTGTGATCTGTGATGGCGTGGAGGTGAAACACGGAGTCACACTCAGACCACAGTGTGTGCTCGCTTACAGCGTGGTGGTGGGGCCGGGCGTGTCTCTCCCTGAGGGGACGGTCGTGTCTCTGCATCACCCAgacgaggaggaggacgaggacgaTGAAGACGAGTTCCTGAGTGACGATAATGACGTCACTGTCCATAAAGACAAGACCAAACACaaggCGTATAACCCGGCTGAGGTGGGCTCTGAGGGGCGGGGCTACCTGTGGAAGAACAGCAGCGTTGATGatgcagaggaggaggagctaaCACAGTGCATCTGGgGTCTGGTTCTGAAGCCCGATCCCGACAGTGAGACGGAGAGCGAGGCCAGTGAAGGGTCACATGACCCTGGGAGCCGCTCTGAGTCGCCCGAGCTCGATGATGTCAGAGTGTTTCAGAACGAGGTTCTCGGCACTCTGCAGCGAGGTCTGGAGGAGAACATCAGCTGTGACAATCTGGTTCTGGAGATAAACTCGCTCAAGTACGCGTATAATATCTCTCTGAAGGAAGTGATGCAGATTCTCACTAAAGTGGTTCTGGAGTTTCCTTTCCAACAGCATGGAGCTCACATTACTGCAGCCCAGTACTCCTCCCTCCTGCTGCcgttgttgaagAAGTGGGCTCCTGTGTTTAAGAACTACGTGAAGCGAGCTCaggatcacacacactgcctctcCACTCTGGAGGAGGTGTTCATGGAGCATGAAACATACTGGCCCGCCCTCGCCAAGgtgTTGATGAGTGTGTATCAGTTGGAGATTCTGGATGAGGATTCCATTATGCGCTGGTTCTCTCAGGGAGCGCAGACGGAGCGGAGTAAAACCCTGCGCAAGAACCCGGGGCTGCTGAAGTTCATCCAGTGGTTGGAGGAGGCCGAGGAGTCTTCAGAGGGAGACGACTGAACAGCgcatcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagcagaaCTGACTATCTCAGTAATTATTCATGCAAACAAGGGAAAGTGAtgttaacacacactgtgtgtttattagcaCTTAACACTGCTTTATGATGCTTTTGTAAATCTGCTTTAGCTGTGTGAGTTATTGTTACCATGGACACGACCTTTGACCCTGTGACCCTGATGTTAGCCCTGACTCGATGAATGGACCTGGGAGTGAAATATGATGTGTAATATTCCTACATTTTGATTGGCAGCTGTGAGACCTGTTTAAAGGCTGAAATGAAAgagagtgtgtttttatttatccagAGTTTGTACAGATCCTGGAAATGTCATGTGGAATATCAGAAGAGACATCTTCAGGGCTTTTACGCTTTCAGAGAAGGAATTCTGGGAATATTAACATGTCTTTAAGTGTCAATTCAGCTGGGATTTATTTCACCTGAAGTTATTATACTGCTCATTTTCAGACGCGACGCTTATTTAAGTGGTTCGTTCCGGTGGTTGCAGCAGATACTAATGAACATTTACCCTGCGTTCACGCTAGAGAGAAACAAAGCGACAGGTAATCGCTCATTGTCCATGATGTGGAGCTGTGATCCTGCGGCgcgtgtggtccgacgtttcctcagttccccgctcacaactttacttcctacctgcagttattTGAGAAGAAAACCTCCCCTCATTGTGGCttcatcttctcctgtcatGTACGAGCTCTCAGTAATGTGTAGAGtgacgtaaggaataaaaataaagcttggaaggaagta

Function

symbol description
eif2b5 Predicted to enable guanyl-nucleotide exchange factor activity; translation initiation factor activity; and translation initiation factor binding activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2B complex. Is expressed in midbrain; myotome; optic vesicle; pharyngeal arch; and retina. Human ortholog(s) of this gene implicated in leukoencephalopathy with vanishing white matter. Orthologous to human EIF2B5 (eukaryotic translation initiation factor 2B subunit epsilon).

NR:

description
translation initiation factor eIF-2B subunit epsilon

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K03240 EIF2B5; translation initiation factor eIF-2B subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
TU68164 False 1986 lncRNA 0.45 4 279982 282983
TU68285 False 726 TUCP 0.54 6 290510 298456
XM_034303516.1 True 2601 mRNA 0.50 14 280534 300017

Neighbor

gene id symbol gene type direction distance location
LOC113525282 LOC108267103 coding downstream 7362 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 95009 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 171888 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 195518 65830 ~ 84464 (-)
LOC117597016 NA coding upstream 3666 303683 ~ 321689 (-)
LOC117597018 NA coding upstream 400032 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 410342 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 548056 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 563361 863378 ~ 886395 (-)
G57727 NA non-coding downstream 17646 222221 ~ 262336 (-)
G57723 LOC108267083 non-coding downstream 23306 213341 ~ 256676 (-)
G57716 NA non-coding downstream 72827 203973 ~ 207155 (-)
G57711 NA non-coding downstream 82316 192687 ~ 197666 (-)
G57706 NA non-coding downstream 96717 183056 ~ 183265 (-)
G57776 NA non-coding upstream 17475 317492 ~ 352685 (-)
G57778 NA non-coding upstream 26328 326345 ~ 357054 (-)
G57760 NA non-coding upstream 36253 336270 ~ 421309 (-)
G57752 NA non-coding upstream 44554 344571 ~ 394411 (-)
G57763 NA non-coding upstream 53990 354007 ~ 549005 (-)
LOC117596995 LOC108268238 other downstream 181865 84815 ~ 98117 (-)
G57733 NA other upstream 963 300980 ~ 856952 (-)
LOC117597012 NA other upstream 47042 347059 ~ 497563 (-)
LOC117597013 NA other upstream 75226 375243 ~ 451693 (-)
G57830 NA other upstream 312226 612243 ~ 614243 (-)
G57838 NA other upstream 383471 683488 ~ 746031 (-)

Expression


Co-expression Network