G57723 (LOC108267083)


Basic Information

Item Value
gene id G57723
gene name LOC108267083
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 213341 ~ 256676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68179
GGCAAAACTTGATTTATTAAATGAACATTCAACTCGGGACACTAAAATATAGACATCAGAGAGGACGCAATTATTTTATACCTAACGacataaaaataactaaaaatccCACAACTGGtaaaaatgctatattttttACTTGACAAACTCAAGGTTCTAACACTTCATGTAAAACCTTAAaatatacagttgtatgcaaaagtttgggcactcCTGCCCAAATTACatgttttgttgctttttggaaatagaagaagagaaataaaacaacctCCTCAGCAaaccattaaaaacaacaacaacaacaacaacattaacatttttttctgcaaatattaacgcacagttactttatataTTATGAAATGAACAATTCtgggaaaaaattaaacactacTAGGTCAGTATTTAGTAACACTCCCATTTGCAGACATCAGCTTACAGATGTTTTTTGTAGCCAGCTAGGTGTCTTTCTATTCTTGTTTAATGAATTTGCACCCACTTGTCCTTGCAGAATGCTTCTGGTTTTTAGATCTTCTTGGGCTGTCTTGCATGCACAGCATGTTTAAGATctacacacattttcaatgaTGTTCAAGTCAGGATACTGTGAGGGCCATTCCAGAAGCTTCAGCTTGCATTTCTTGAAGAagttcatggtggattttgagGAATGTTTCTGACACTTTTGACTGACTGAGTCACATTTGCTTCcagaatttgctgatatttactggaATCCGTTCTTGCATCTACCTGTGCACTGTTTTCTGTGTCACTGGCTGCAATACAACCCCAAAGCAGAATAGATCCATCCCCATGCTTAACAGCTGGCAGGATGCTGTTTTCCTCAAACGCTgctcttttttctccaaacatacctTTGGTCATTGTGCACGAAGAGTTCCATTTCTATTTGATCAGGACTTGTTTCCCAAATGCCTCTGACTTATCTAGATGTTGTTTCTCTCACATCAGATTTTCACTACTGTGATGAGGTTGCAGGTAAGTTTTCCTTCTGATGGCCCTTCaatgcagatcatgtttgtgcaagcaaTGTGATGATGGTCAGATGTATTAATCACCAGGGGGGTATGAGATTCGGTGGTAAAAACTCCTCCGGTTAGCCTGACTGTACATAACTCACTGGCCAGGATGGGACAATGGACCCAGATCTGGGTATTTCTTCCTCTATTACCGACTTTCCCCTCAATGCACAGAGGTCAGCAGGCCTGCTTGTTTTCCCAAAGCGGCCCACAAATCCTTTGCTTCCACTGCTGCCAATGCTTCCACTGCTGCTCCAGCAGCACCAATGCATGCATTTCTGGAGCTCCTAAACTTGTTAAAAACCTTTTGATGGTTTCCTCATATGCTACACTTCCCCAAACACCTACTGCAGGATCTCATGTCATGGGAGTCCTTTAAGATCTCCCCTTATAAGCCCATGTATCTTAAAGCATTCTCTTAAAGATGTCAGACTTTGACTGATTTCCAGGTCACAACTGAAGGATTGATCAATCAAGAAGGCATCAATTAAGGGTTTTTTTAAGTGCCTTGTGTCCTTCAATGAAATGCATGATTCAACATAAAACATCCAAATTGTACCACAAAAAATTCTACCCTGTTTATTGCTTATgcaaatctatttatttaagaacACTGCATGAAAATCAGTGACCAACAAATTAAAACAGCCTCCTCACGATAAACAGGAGGAATACAGCGACTGAATAAAGACTCACGGCACATGAGGGTGGGCTGAAATTATGCAGTGATGTACAACTCATGTACTGTTCCTGATTTTTCTGCCAGCTGATCATATCTACAACATACATACCTGCCAGTCTAACCATAAAGGAAATATGGAGATGGGTGATGGAAACCCTGaacaatttgttaaaaatattgaGTTGTGCTGAAACCCTAAGAAAAGGCTCTCCACACTTTtccttttattgttattgtcgTCTTTTTAAACTAGGGATGGctgtttttcaaacattttttatgcTTATATAAAGCATCTGTTGAGAATTAATGGAGTTATCACAGTATTGTAACACtaattaatttccatttcagCAGTGCAGTGAGTGCGTCAGTCCCCATACtcttcattctttattttagtGTCGAACACTCCTGAGTGTTTACATAACGCCTACACACTTTACAATTTTCCCCTAGTTTTGACTTTGAAAACTGAACTCTCGCTTCAGCAGGAAATTTTGTCACGTATCTGGTTGCTATCCACTTTTGGAGATCTAGACTGTGTGCACAATGAGCTTTAACTCGACACGCGAAATGGCCAGCTTAGCTAGGTGGAACAGGAACGGTTGTTTCTGTGATGACACTCTGCAACAGAGCAGTAAATTGTGAAACAAAATTTTTTGTTGGTATGTGTGTGGCTTTGAGTGTGGGAAAAAACCCATGAGATTTGAGAACACAATAAAGGCAAAAAAACTGAACCATGCGACTTGACAGGTATGCTACAAATATATTGCCTTTGAACAGGCTACGAGTTGTCAGTGTTTACTGTGAAGTTCCTTAGTATATCTCCTCAGTGCTGGACTTCTCTCCTATGTGAAGACGCTGGTGTAGTTGTAGAGTATTTTTGcgattaaaactcttcccacacagTGAGCATTGATACGGTTTCTCTCCGGTGTGAATGTGCTGGTGTCGGTGGAGAGTACTTTGTTGAGCAAAAGTCTGTCCACACTCTGAACACTGAAACGgcctctctcctgtgtgaatgcggtGGTGTTGCTGTAGAGTATTCATCCGACtgaaactctttccacacagTGAGCATTGATACGGTTTCTCTCCGGTGTGAATGTGCTGGTGTCGGTGGAGAGTACTTTGTTGAGCAAAAGTCTGTCCACACTCTGAACACTGAAACGgcctctctcctgtgtgaatgcggtGGTGTTGCTGTAGAGTATTCATCCGACtgaaactctttccacactccGTACAGAAATATGGCTTCTCTCCGGTGTGAGTGCGCTGATGTCCTTGTAGAGTTTTCTTCTGATGAAAACTCTTCCCGCATTCTGAGCAGTGAAACAGATTCTCTCCTGTGTGTAGTCGCTGGTGTTCTTTGAGAGTACCACTCTCACTAAAACTCATCCCACACTGCATACAGTGATACGGTTTCTCACCTGTGTGAACGCGCTGGTGTCGTTGTACAGCATTCTTGCGAGTAAatctctttccacactgtgagcactgaTATGGTTTTTCTCCAGTGTGAATTCGCTGATGCGTTTGGAAATTCTGCTGAtgagtaaaactctttccacaccaTGTACAGTGGTACGGTTTTTCTCCCGTGTGAACGCGCTGGTGTTGTTGGAGATTACTCTCttgagtaaaactcttcccacactctgaGCACTGATACGGTTTCTCCCCAGTGTGAATTCTCTGGTGTTTTTGGAGGTCTCCCAGTCTagcaaaactcttcccacagtCTGAGCAGTGGTGGATTTTTTTCCACGTTAGTTTGGGTGAGGTCTTTGGGAGGAGAGAACCAGACTGACTGCTGCAACTTACTGGGGACAGATTCTCAGATTTGATTTCTCCAGATATCTGAAGCCTTTCTGAAGCAGTGCCATCTCTTGATGCGTTTGTGGTGGTCAGATCGAGAGGTGTGTGAAACTGGACAAAAGAAGCAGGAGACGACTTGTAACAGAACATCATTCCTTTCTGGATaagaaaaatggaaacaaaaaaa
>TU68183
GGCAAAACTTGATTTATTAAATGAACATTCAACTCGGGACACTAAAATATAGACATCAGAGAGGACGCAATTATTTTATACCTAACGacataaaaataactaaaaatccCACAACTGGtaaaaatgctatattttttACTTGACAAACTCAAGGTTCTAACACTTCATGTAAAACCTTAAaatatacagttgtatgcaaaagtttgggcactcCTGCCCAAATTACatgttttgttgctttttggaaatagaagaagagaaataaaacaacctCCTCAGCAaaccattaaaaacaacaacaacaacaacaacattaacatttttttctgcaaatattaacgcacagttactttatataTTATGAAATGAACAATTCtgggaaaaaattaaacactacTAGGTCAGTATTTAGTAACACTCCCATTTGCAGACATCAGCTTACAGATGTTTTTTGTAGCCAGCTAGGTGTCTTTCTATTCTTGTTTAATGAATTTGCACCCACTTGTCCTTGCAGAATGCTTCTGGTTTTTAGATCTTCTTGGGCTGTCTTGCATGCACAGCATGTTTAAGATctacacacattttcaatgaTGTTCAAGTCAGGATACTGTGAGGGCCATTCCAGAAGCTTCAGCTTGCATTTCTTGAAGAagttcatggtggattttgagGAATGTTTCTGACACTTTTGACTGACTGAGTCACATTTGCTTCcagaatttgctgatatttactggaATCCGTTCTTGCATCTACCTGTGCACTGTTTTCTGTGTCACTGGCTGCAATACAACCCCAAAGCAGAATAGATCCATCCCCATGCTTAACAGCTGGCAGGATGCTGTTTTCCTCAAACGCTgctcttttttctccaaacatacctTTGGTCATTGTGCACGAAGAGTTCCATTTCTATTTGATCAGGACTTGTTTCCCAAATGCCTCTGACTTATCTAGATGTTGTTTCTCTCACATCAGATTTTCACTACTGTGATGAGGTTGCAGGTAAGTTTTCCTTCTGATGGCCCTTCaatgcagatcatgtttgtgcaagcaaTGTGATGATGGTCAGATGTATTAATCACCAGGGGGGTATGAGATTCGGTGGTAAAAACTCCTCCGGTTAGCCTGACTGTACATAACTCACTGGCCAGGATGGGACAATGGACCCAGATCTGGGTATTTCTTCCTCTATTACCGACTTTCCCCTCAATGCACAGAGGTCAGCAGGCCTGCTTGTTTTCCCAAAGCGGCCCACAAATCCTTTGCTTCCACTGCTGCCAATGCTTCCACTGCTGCTCCAGCAGCACCAATGCATGCATTTCTGGAGCTCCTAAACTTGTTAAAAACCTTTTGATGGTTTCCTCATATGCTACACTTCCCCAAACACCTACTGCAGGATCTCATGTCATGGGAGTCCTTTAAGATCTCCCCTTATAAGCCCATGTATCTTAAAGCATTCTCTTAAAGATGTCAGACTTTGACTGATTTCCAGGTCACAACTGAAGGATTGATCAATCAAGAAGGCATCAATTAAGGGTTTTTTTAAGTGCCTTGTGTCCTTCAATGAAATGCATGATTCAACATAAAACATCCAAATTGTACCACAAAAAATTCTACCCTGTTTATTGCTTATgcaaatctatttatttaagaacACTGCATGAAAATCAGTGACCAACAAATTAAAACAGCCTCCTCACGATAAACAGGAGGAATACAGCGACTGAATAAAGACTCACGGCACATGAGGGTGGGCTGAAATTATGCAGTGATGTACAACTCATGTACTGTTCCTGATTTTTCTGCCAGCTGATCATATCTACAACATACATACCTGCCAGTCTAACCATAAAGGAAATATGGAGATGGGTGATGGAAACCCTGaacaatttgttaaaaatattgaGTTGTGCTGAAACCCTAAGAAAAGGCTCTCCACACTTTtccttttattgttattgtcgTCTTTTTAAACTAGGGATGGctgtttttcaaacattttttatgcTTATATAAAGCATCTGTTGAGAATTAATGGAGTTATCACAGTATTGTAACACtaattaatttccatttcagCAGTGCAGTGAGTGCGTCAGTCCCCATACtcttcattctttattttagtGTCGAACACTCCTGAGTGTTTACATAACGCCTACACACTTTACAATTTTCCCCTAGTTTTGACTTTGAAAACTGAACTCTCGCTTCAGCAGGAAATTTTGTCACGTATCTGGTTGCTATCCACTTTTGGAGATCTAGACTGTGTGCACAATGAGCTTTAACTCGACACGCGAAATGGCCAGCTTAGCTAGGTGGAACAGGAACGGTTGTTTCTGTGATGACACTCTGCAACAGAGCAGTAAATTGTGAAACAAAATTTTTTGTTGGTATGTGTGTGGCTTTGAGTGTGGGAAAAAACCCATGAGATTTGAGAACACAATAAAGGCAAAAAAACTGAACCATGCGACTTGACAGGTATGCTACAAATATATTGCCTTTGAACAGGCTACGAGTTGTCAGTGTTTACTGTGAAGTTCCTTAGTATATCTCCTCAGTGCTGGACTTCTCTCCTATGTGAAGACGCTGGTGTAGTTGTAGAGTATTTTTGcgattaaaactcttcccacacagTGAGCATTGATACGGTTTCTCTCCGGTGTGAATGTGCTGGTGTCGTTGTAGAGTATTTTTGcgattaaaactcttcccacacagTGAGCATTGATACGGTTTCTCTCCGGTGTGAATGTGCTGGTGTCGGTGGAGAGTACTTTGTTGAGCAAAAGTCTGTCCACACTCTGAACACTGAAACGgcctctctcctgtgtgaatgcggtGGTGTTGCTGTAGAGTATTCATCCGACtgaaactctttccacactccGTACAGAAATATGGCTTCTCTCCGGTGTGAGTGCGCTGATGTCCTTGTAGAGTTTTCTTCTGATGAAAACTCTTCCCGCATTCTGAGCAGTGAAACAGATTCTCTCCTGTGTGTAGTCGCTGGTGTTCTTTGAGAGTACCACTCTCACTAAAACTCATCCCACACTGCATACAGTGATACGGTTTCTCACCTGTGTGAACGCGCTGGTGTCGTTGTACAGCATTCTTGCGAGTAAatctctttccacactgtgagcactgaTATGGTTTTTCTCCAGTGTGAATTCGCTGATGCGTTTGGAAATTCTGCTGAtgagtaaaactctttccacaccaTGTACAGTGGTACGGTTTTTCTCCCGTGTGAACGCGCTGGTGTTGTTGGAGATTACTCTCttgagtaaaactcttcccacactctgaGCACTGATACGGTTTCTCCCCAGTGTGAATTCTCTGGTGTTTTTGGAGGTCTCCCAGTCTagcaaaactcttcccacagtCTGAGCAGTGGTGGATTTTTTTCCACGTTAGTTTGGGTGAGGTCTTTGGGAGGAGAGAACCAGACTGACTGCTGCAACTTACTGGGGACAGATTCTCAGATTTGATTTCTCCAGATATCTGAAGCCTTTCTGAAGCAGTGCCATCTCTTGATGCGTTTGTGGTGGTCAGATCGAGAGGTGTGTGAAACTGGACAAAAGAAGCAGGAGACGACTTGTAACAGAACATCATTCCTTTCTGGATaagaaaaatggaaacaaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68179 True 3742 lncRNA 0.41 2 213341 256676
TU68183 False 3658 lncRNA 0.41 2 213341 256676

Neighbor

gene id symbol gene type direction distance location
LOC113525290 NA coding downstream 28368 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 105247 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 128877 65830 ~ 84464 (-)
LOC113525282 LOC108267103 coding upstream 5770 262446 ~ 272620 (-)
LOC117597016 NA coding upstream 47007 303683 ~ 321689 (-)
LOC117597018 NA coding upstream 443373 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 453683 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 591397 848073 ~ 857200 (-)
G57716 NA non-coding downstream 6186 203973 ~ 207155 (-)
G57711 NA non-coding downstream 15675 192687 ~ 197666 (-)
G57706 NA non-coding downstream 30076 183056 ~ 183265 (-)
G57526 NA non-coding downstream 35793 177318 ~ 177548 (-)
G57502 NA non-coding downstream 54574 157913 ~ 158767 (-)
G57776 NA non-coding upstream 60816 317492 ~ 352685 (-)
G57778 NA non-coding upstream 69669 326345 ~ 357054 (-)
G57760 NA non-coding upstream 79594 336270 ~ 421309 (-)
G57752 NA non-coding upstream 87895 344571 ~ 394411 (-)
G57763 NA non-coding upstream 97331 354007 ~ 549005 (-)
LOC117596995 LOC108268238 other downstream 115224 84815 ~ 98117 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other upstream 23306 279982 ~ 300017 (-)
G57733 NA other upstream 44304 300980 ~ 856952 (-)
LOC117597012 NA other upstream 90383 347059 ~ 497563 (-)
LOC117597013 NA other upstream 118567 375243 ~ 451693 (-)
G57830 NA other upstream 355567 612243 ~ 614243 (-)

Expression


Co-expression Network