G57727


Basic Information

Item Value
gene id G57727
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 222221 ~ 262336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68190
GTGTGGAAAGAGTTTCACTCAACAAAGTACTCTACAGCAACACCAAcgcattcacactggagatAAACCGTATCATTGCTGTGAGTGCGGGAAGAGTTTCAATCGCAATAGTCAACTCCAACACCATCGGTGTGTTCAGTGACATCAGTGGGAAAAACTTCACTTATATATATGAACACACAGCCTATAGCCAATTACACAAACTTCAAGAACATGTATTTGAATTTTAGCATTTACTTTGTGAAGATTTAAATTAGGAATCTGAAGATCAATGAGTTTTTAGATTGGAATTGGCCAGATTAGGCCAATTGGATTAAATATGGGATAAGTGATCGGACCCTTTCTCTTTTATCTAACCAATTCGGCACGTTGACCCAAAACATGCGAGTCAGATATTGCTGTGTGTGCTGAGggttaaaaggaaaaagaattgTGCACTGAAACGTGTCAGTGCTacttgtgtggttttttttattttgtgcctCGTGGGGAAGCAAAGCAAAGAATTTCAGAGACGCTATGCCACACCTCCGAGACGCCACGTCTGAGAAACACCACGCCAGTGAGACCCTGCGCCAGTGAGACCCCGCGCCAGTGAGACACCACATCCGTGAGAttacagtatgtagtatgcCTGTGTTGCAACAATCGTTTAACTTGCCGCTATTTCTGGCTGAAagtctatttaaaaatatttaagacCGGAAGCGTAATATGAGTTGGtttcagaaattattttaactgACAGTACATCAGTCTAATCATCCACTGGTATCAGC
>TU68191
tttttattttgtgcCTCGTGGGGAAGCAAAGCAAAGAATTTCAGAGACGCTATGCCACACCTCCGAGACGCCACGTCTGAGAAACACCACGCCAGTGAGACCCTGCGCCAGTGAGACCCTGCGCCAGTGAGACCCTGCGCCAGTGAGACCCTGCGCCAGTGAGACCCCGCGCCAGTGAGACACCACATCCGTGAGAttacagtatgtagtatgcCTGTGTTGCAACAATCGTTTAACTTGCCGCTATTTCTGGCTGAAagtctatttaaaaatatttaagacCGGAAGCGTAATATGAGTTGGtttcagaaattattttaactgACAGTACATCAGTCTAATCATCCACTGGTATCAGC

Function

NR:

description
PREDICTED: lysine-specific demethylase 5C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68190 True 779 lncRNA 0.41 2 222221 223031
TU68191 False 359 lncRNA 0.48 2 222221 262336

Neighbor

gene id symbol gene type direction distance location
LOC113525290 NA coding downstream 37248 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 114127 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 137757 65830 ~ 84464 (-)
LOC113525282 LOC108267103 coding upstream 110 262446 ~ 272620 (-)
LOC117597016 NA coding upstream 41347 303683 ~ 321689 (-)
LOC117597018 NA coding upstream 437713 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 448023 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 585737 848073 ~ 857200 (-)
G57716 NA non-coding downstream 15066 203973 ~ 207155 (-)
G57711 NA non-coding downstream 24555 192687 ~ 197666 (-)
G57706 NA non-coding downstream 38956 183056 ~ 183265 (-)
G57526 NA non-coding downstream 44673 177318 ~ 177548 (-)
G57502 NA non-coding downstream 63454 157913 ~ 158767 (-)
G57776 NA non-coding upstream 55156 317492 ~ 352685 (-)
G57778 NA non-coding upstream 64009 326345 ~ 357054 (-)
G57760 NA non-coding upstream 73934 336270 ~ 421309 (-)
G57752 NA non-coding upstream 82235 344571 ~ 394411 (-)
G57763 NA non-coding upstream 91671 354007 ~ 549005 (-)
LOC117596995 LOC108268238 other downstream 124104 84815 ~ 98117 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other upstream 17646 279982 ~ 300017 (-)
G57733 NA other upstream 38644 300980 ~ 856952 (-)
LOC117597012 NA other upstream 84723 347059 ~ 497563 (-)
LOC117597013 NA other upstream 112907 375243 ~ 451693 (-)
G57830 NA other upstream 349907 612243 ~ 614243 (-)

Expression


Co-expression Network