G57735


Basic Information

Item Value
gene id G57735
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 646698 ~ 781611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68242
GTCTCGGACGATGTAAACTCCCCCGGCAGTCGAATTTACTCCTCTCAGTGTAAGAACTGTGTTAGTGAGTGATGTTCTCGGTGTGTATTCAGCTGTACAGCTTAGTGATCTTCTATCCACAGTGCAGATCTGTTCACCATGTGGATCTGCTGAATCTCCACCCTTATAGATCACCTCCACTCGCTCTGATACGTGCAAATCCAGCTGCAGATCTTCACCAGCGTTTATCTGAACTGATGATATCATGgctgaggagaaaaaacacTCAACATCTTAACTGGGTGTAAATGTGATATAACACATTAAACCTAAATCAGTAAGAGTGTATAAGCTATAGAGCAGGTAAAGACACTTACTCTCGATGCTGAGACGCACATCATTAATGTCTtcaccatcacactcacacgTGTATAAACCCATCATACTGTAATCAGCTGCAGTGATGGTGAGGGTGAGATTTCCCTTCAGGTACTGATCATGGGACATTTTAAATCCCTCCTTTAGTGACCAGCAGGATGTCTGATCACACCGAGCCAATACAACACTTTGGTTACTGAACAGAGTCCATTTGGCCTCACGAGAACATTTCCGTTCACAGGGCAGAGCAGCAGCCTGATTAAACTTCACCTGTACAGTAGTGACAGCTGATA
>TU68245
CTTCAACAAGGActgtgtaaatatgaatgtcGTCGTTATTCCCCCTGTCCCGGACGATGTAAACTCCCCGATCAGTCAGCTTTACTCCTCTCAGTGTAAGAACTGTGTTAGTGAGTGATGTTCTCGGTGTGTATTCAGCTGTACAGCGTAGTGAGCTTCTATCCACAGTGCAGATCTGTTCACCATGTGGATCTGCTGAATCTTCACCCTTATAGATCACCTTCACTCGCTCTGATACGTGCAAATCCAGCTGCAGATCTTCACCAGGGTTTATCTGAACTGATGATATCATGgctgaggagaaaaaacacTCATCATCTTAACTGGGTGTAAATGTGATATAACACATTAAACCTAAATCAGTAAGAGTGTATAAGCTATAGAGCAGGTAAAGACACTTACTCTCGATGCTGAGACGCACATCATTAATGTCTCTGCCATCACACTCACATATGTATAAACCCCTCATACTGTAATCAGCTGCAGTGATGGTGAGGGTGAGATTTCCCTTCAGGTACTGATCATGGGACATTTTAAATCCCTCCTTTAGTGACCAGCAGGATGTCTGATCACACCGAGCCAATACAACACTTTGGTTACTGAACAGAGTCCATTTGGCCTCACGAGAACATTTCCGTTCACAGGGCAGAGCAGCAGCCTGATTAAACTTCACCTGTACAGTAGTGACAGCTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68242 False 650 lncRNA 0.44 3 646698 730091
TU68245 True 696 lncRNA 0.44 4 646698 781611

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 325009 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 374078 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 461725 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 538604 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 562234 65830 ~ 84464 (-)
LOC117597014 NA coding upstream 66462 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 81767 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 143423 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 155549 937160 ~ 942590 (-)
LOC113524140 NA coding upstream 163433 945044 ~ 961033 (-)
G57832 NA non-coding downstream 26560 619705 ~ 620138 (-)
G57821 NA non-coding downstream 27843 559634 ~ 618855 (-)
G57828 NA non-coding downstream 46422 599622 ~ 600276 (-)
G57818 NA non-coding downstream 47496 553769 ~ 599202 (-)
G57755 NA non-coding downstream 51502 552099 ~ 595196 (-)
G57848 NA non-coding upstream 40639 822250 ~ 825864 (-)
G57849 NA non-coding upstream 41169 822780 ~ 824304 (-)
G57850 NA non-coding upstream 45710 827321 ~ 841661 (-)
G57742 NA non-coding upstream 76136 857747 ~ 861437 (-)
G57861 NA non-coding upstream 127906 909517 ~ 910029 (-)
G57830 NA other downstream 32455 612243 ~ 614243 (-)
LOC117597012 NA other downstream 149135 347059 ~ 497563 (-)
LOC117597013 NA other downstream 195005 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 346681 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 548581 84815 ~ 98117 (-)
G57868 NA other upstream 204300 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 228614 1010225 ~ 1029025 (-)
G58190 NA other upstream 910715 1692326 ~ 1692997 (-)
G58534 NA other upstream 1289413 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 1422941 2204552 ~ 2222099 (-)

Expression


Co-expression Network