G57747


Basic Information

Item Value
gene id G57747
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 452633 ~ 698272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68261
tgggggtttgttgctgaattattttctattttgcgtcGTCGcgtatcgctgtagtttaggattgtgggggtttgttgctgaattattttctattttgcgtcGTCGtgtatcgctgtagtttaggattgtgggggtttgttgctgaattattttctattttgcgtcGTCGTGTATTgctgtagtttaggactgtgggggtttgttgctgaattattttctattttgcgtcGTCGtgtatcgctgtagtttaggactgtgggggtttgttgctgaattattttctattttgcgtcGTCGTatatcgctgtagtttaggattGTGGGGGTTTTGTTGCTGGTTGAAGTTCTGGTTGCTTTTGACTGCAGGTTCAGCAGCAGGTTCGTTGGTTCGGCAGATGTTTGTTTTGTCTCCTTTGTTCTGAAGtttgaagaaaacacaaagagaagGGAAATAGGACATTACTCCATCGTTACCTGAAGAACAGGAGCAAGAGACACAGTACAGCACTGATACTTTCCAAGCAGCGCCGCCGGTGTCCTGCGCATCATTCCAGATCCTGTGATTGGACAACCGACCGGTCGATCTTCCCTGTCAGCGTGATGGCGACACCCATCTCTGAACCAATCAGGCACCCCCAGTCTACTATAAGGACTCGGAAATGACGTAAGACGGGAGAGTGTGTTTCTCCTTTGCTGATAGTTCTCGCTTGTTTGTCACGCTGTCCATCCTTTTCGAGTTTCTGGTGCAATTATGATTTGTTAGTTTATCTTGAGTTATTTCTGATCCCTTTACTCTACATGTTGTATTTACTCGCCTCTGATTTGACTCTGGCTGTTTGCCCGATTGTGCTGTGATCTgattccctttctctctttaagaGTTGATGGTTGGATTTATCTCTTGACTCATAGTGTTGAGAGGAGGTTAGTATGTCACGTGACCTACACAAAGCAACATGTAGAATATCGCTTGTATAAAAACACTAGGATAGGAGCGGGAGCTAATGcttgtatttatgttttgttagtGAGAGTAGTTAGTTGGCGTTTACGCtgaagatttgttttgttttctttttctttgtttagatTAGCGTTGAATTGGTTGGAGTTAgtaagtgttttgttttattaatttctttgctTTCAGCTCCGCTCACGTCTCACactgttgagttttttttaaagtatataaCTTGTAAATATCATCTCCCTTACTCTTTGACGTTTCTGTCGtcactgtaaatatgaaaagCAATCGAGTGTTTTGATGGACATAATTCCTCACTAAAGTTTTTCTGATAAGCATTTTCGGTTTCTGTTTGATTCATTACTCCACACATCTCATTCCTTTAGTAACAGACAGCCTCCCCGATtctaaaaacatctttaatttctttttcattaatttattctttgtGTTGACTTCCTACATCCCTGGACGCTAATTTTGACAACAACAGCAGCCCAATAGGAAGTCGTAGCATACATGCTCATGTCAAGTAACTTTAgcagttttacacacactcagtactgtttgactttatagtatgcAGCTGTGGATGAGCAGTGAGGAGGTGTTTCCtctcagtctggttcctctcaaggtttcttcctcatgtcatttcAGAGAGTCTTTTc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68261 True 1641 lncRNA 0.41 4 452633 698272

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 130944 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 180013 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 267660 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 344539 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 368169 65830 ~ 84464 (-)
LOC117597018 NA coding upstream 1777 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 12087 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 149801 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 165106 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 226762 925034 ~ 933915 (-)
LOC117597028 NA non-coding downstream 9204 441942 ~ 443429 (-)
G57799 NA non-coding downstream 16960 429960 ~ 435673 (-)
G57793 NA non-coding downstream 23097 427215 ~ 429536 (-)
LOC117597025 NA non-coding downstream 26548 421730 ~ 426085 (-)
G57760 NA non-coding downstream 31324 336270 ~ 421309 (-)
LOC117597026 NA non-coding upstream 36649 734921 ~ 748267 (-)
G57843 NA non-coding upstream 53314 751586 ~ 752375 (-)
G57844 NA non-coding upstream 68933 767205 ~ 767558 (-)
G57848 NA non-coding upstream 123978 822250 ~ 825864 (-)
G57849 NA non-coding upstream 124508 822780 ~ 824304 (-)
LOC117597013 NA other downstream 940 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 152616 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 354516 84815 ~ 98117 (-)
G57740 NA other upstream 35283 733555 ~ 734771 (-)
G57868 NA other upstream 287639 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 311953 1010225 ~ 1029025 (-)
G58190 NA other upstream 994054 1692326 ~ 1692997 (-)
G58534 NA other upstream 1372752 2071024 ~ 2104011 (-)

Expression


Co-expression Network