LOC117597039


Basic Information

Item Value
gene id LOC117597039
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 1010225 ~ 1029025 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68271
CAGGTGTCCAAACTGCTGCCAAACACATTTTCTGAGAAGCACATCATAGTTTATtgcaaacaaacagataaactgGAAGCTGCAAAGAAATACTTTGAGCAGTGGTGTCAGAAGAACAACAGCGAAGCTCAGgatgttgATATCGTGGTTCCAGAATTAAGTTCTATAATTCCACTGCCTCCGGCTTCATCAGCAGAAGATAGaagagctggagctggagaacGGGTAAAAAAAGGCTTCTTTGGCGCTCCAAAAGGACAACAGCATTGAAACGTCATTGCCCCCTGCTGGTAGACCGAATAAATCGGGCTTATTTATCGGCCAATCCTCCAATAAATGTTTAACCTGCTTATAAAGTGATAAGACAAACAGCTGGTGCGTACCCCAGATTCTTtacaaagttggtcacatatcgATCAGAACCTACTAAATCATATCGCAGCAGTGATTCAGTGGTGTCAGAAAATATCAAACTGTTCCTATAAGAATAGAAATTGTATCG
>XM_034303528.1
ATGATGAGCCAAAAGCGCCCAAGCGAGGATGTGCCATGCCCTGAGAGCTTTAACACCCCCGAGAAGAGAAGCTGTGATCCAGCCGTGACGGAAACCATGATCCAGCAGGACGgccACCATGGTGAGATTTCATCTGAACACAAGGTGTTTAATGACCCGATCCATGGTCACATCGAGTTCCACCCTCTGCTGGTGCGGATCATCGACACTCCTCAGTTCCAGAGACTGCGGAACATTAAACAGCTGGGAGGAGCATACTTGGTGTTTCCTGGAGCTTCACACAACCGCTTTGAACACtccataggtgttgtcGGGTATTTAGCAGGCTGTCTCGTTAAAGCTTTGAGTGAAAAACAGCTAGAACTCGGCATCACGGAAAAAGACATCCTGTGTGTTCAGATCGCTGGCTTGTGCCATGACTtggGTCACGGCCCATATTCTCATCTGTTTGACAGCTTGTTTATACCAAAAGTCCGGCCTGATTACAAATGGAAGCATGAGATTGCGTCGGTGCAAATGTTTGACCATCTGGTGAAGGAGAATAATCTGGAGCCTGTGATGAAGAAATATGGTCTCTCTACCACTGATCTCGAATTTATCAAAGAACAAATTGCAGGACCACTGAACTCAGCTGCCTCACCAAATACATGGAAGTACAAAGGAAGACCTGAGGAAAAGTCCTTTTTGTATGAGATTGTGGCAAATAAGAGAACCAGCATTGATGTGGACAAGTGGGATTATTTCGCCAGAGACTCATATCACCTGGGCATCAAGAACAGCTCAGACCACCTCCGTTTCCTCAAATTCATCCGTGTGTGTGAGGTCAAGGGGAAGAAGCTCATCTGTGCCAGAGACAAGGAAGTCCATGATTTATATGACATGTTTCACACAAGACACTGCCTACACCGCAGAGCCTATCAGCACAAAGTGACCAAGATCATTGAGGAAATGATATCAGAAGCCTTGGTGAAGGCCGATTCTTACATTCAGATCGAGGGAACCGGCGGAAAGATGTACAAAATGTCAGAGGCCATAGACGACATGGAGGCCTACACCAAGCTCACAGATAACATTTTCGAGCAGATCCTGTACTCCTCTCGTCCAGAGCTGTCCGATGCTCGCTCCATCCTGAAGAATGTTGTCTGCAGACGCTTGTACAAGTGTGTGGGACAGACAACACCTGAAACAGCCCTTAACGTgtcaaaggaacagTTGGCCAAGGAGGTGGCTGAGTCCAAACCTGATGATATCGACATTGACCTGAAGCCTGAAGATTTTGTTGTCAAAGTATTTGGTATAGATTATGGCAAGAAGGAGGAAAACCCCATCGACAGCGTCTATTTCTACTGCAAGAATAACCCCAGCAAAGCCTTTCAACCGCAGAAGGAACAGGTGTCCAAACTGCTGCCAAACACATTTTCTGAGAAGCACATCATAGTTTATtgcaaacaaacagataaactgGAAGCTGCAAAGAAATACTTTGAGCAGTGGTGTCAGAAGAACAACAGCGAAGCTCAGgatgttgATATCGTGGTTCCAGAATTAAGTTCTATAATTCCACTGCCTCCGGCTTCATCAGCAGAAGATAGaagagctggagctggagaacGGGTAAAAAAAGGCTTCTTTGGCGCTCCAAAAGGACAACAGCATTGAAACGTCATTGCCCCCTGCTGGTAGACCGAATAAATCGGGCTTATTTATCGGCCAATCCTCCAATAAATGTTTAACCTGCTTATAAAGTGATAAGACAAACAGCTGGTGCGTACCCCAGATTCTTtacaaagttggtcacatatcgATCAGAACCTACTAAATCATATCGCAGCAGTGATTCAGTGGTGTCAGAAAATATCAAACTGTTCCTATAAGAATA

Function

GO:

id name namespace
GO:0045088 regulation of innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

RNA

RNA id representative length rna type GC content exon number start site end site
TU68271 False 502 lncRNA 0.42 2 1010225 1011047
XM_034303528.1 True 1879 mRNA 0.46 15 1010237 1029025

Neighbor

gene id symbol gene type direction distance location
higd1a higd1a,LOC108268302,LOC108442768,LOC107671688 coding downstream 17272 986090 ~ 992953 (-)
LOC113524120 NA coding downstream 28582 967030 ~ 981643 (-)
LOC113524140 NA coding downstream 49192 945044 ~ 961033 (-)
LOC113524137 LOC108267904 coding downstream 67635 937160 ~ 942590 (-)
LOC113524111 LOC108267115,LOC108415103 coding downstream 76310 925034 ~ 933915 (-)
LOC117597040 NA coding upstream 6567 1035592 ~ 1048876 (-)
jmjd4 jmjd4 coding upstream 123891 1152916 ~ 1158401 (-)
wnt9a wnt9a,LOC106599874,LOC107711706,LOC107727550 coding upstream 234705 1263730 ~ 1292226 (-)
c4h1orf35 c7h1orf35,zgc:63882,cunh1orf35 coding upstream 345230 1374255 ~ 1380829 (-)
ipp ipp coding upstream 368949 1397974 ~ 1405757 (-)
G57861 NA non-coding downstream 100196 909517 ~ 910029 (-)
G57742 NA non-coding downstream 148788 857747 ~ 861437 (-)
G57850 NA non-coding downstream 168564 827321 ~ 841661 (-)
G57848 NA non-coding downstream 184361 822250 ~ 825864 (-)
LOC117596994 NA non-coding upstream 10000 1039025 ~ 1040876 (-)
G57895 NA non-coding upstream 46196 1075221 ~ 1075426 (-)
G57896 NA non-coding upstream 48666 1077691 ~ 1077907 (-)
G57935 NA non-coding upstream 84851 1113876 ~ 1114377 (-)
G57947 NA non-coding upstream 145731 1174756 ~ 1174971 (-)
G57733 NA other downstream 153273 300980 ~ 856952 (-)
G57838 NA other downstream 264194 683488 ~ 746031 (-)
G57740 NA other downstream 275454 733555 ~ 734771 (-)
G57830 NA other downstream 395982 612243 ~ 614243 (-)
LOC117597012 NA other downstream 512662 347059 ~ 497563 (-)
G58190 NA other upstream 663301 1692326 ~ 1692997 (-)
G58534 NA other upstream 1041999 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 1175527 2204552 ~ 2222099 (-)
trnag-ucc_1 NA other upstream 1628978 2658003 ~ 2658074 (-)
trnag-ucc_2 NA other upstream 1637742 2666767 ~ 2666838 (-)

Expression


Co-expression Network