Gene
RNA
| Item | Value |
|---|---|
| gene id | G57788 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 374455 ~ 497101 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| ko04621 | NOD-like receptor signaling pathway |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU68305 | True | 932 | lncRNA | 0.39 | 3 | 374455 | 497101 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117597016 | NA | coding | downstream | 52766 | 303683 ~ 321689 (-) |
| LOC113525282 | LOC108267103 | coding | downstream | 101835 | 262446 ~ 272620 (-) |
| LOC113525290 | NA | coding | downstream | 189482 | 177871 ~ 184973 (-) |
| bcl10 | bcl10 | coding | downstream | 266361 | 99678 ~ 108094 (-) |
| ssx2ipa | ssx2ip | coding | downstream | 289991 | 65830 ~ 84464 (-) |
| LOC117597018 | NA | coding | upstream | 202948 | 700049 ~ 704378 (-) |
| LOC117597015 | NA | coding | upstream | 213258 | 710359 ~ 719607 (-) |
| LOC117597014 | NA | coding | upstream | 350972 | 848073 ~ 857200 (-) |
| dis3l2 | dis3l2 | coding | upstream | 366277 | 863378 ~ 886395 (-) |
| LOC113524111 | LOC108267115,LOC108415103 | coding | upstream | 427933 | 925034 ~ 933915 (-) |
| G57786 | NA | non-coding | downstream | 13353 | 360739 ~ 361102 (-) |
| G57778 | NA | non-coding | downstream | 17401 | 326345 ~ 357054 (-) |
| G57776 | NA | non-coding | downstream | 21770 | 317492 ~ 352685 (-) |
| G57727 | NA | non-coding | downstream | 112119 | 222221 ~ 262336 (-) |
| G57723 | LOC108267083 | non-coding | downstream | 117779 | 213341 ~ 256676 (-) |
| LOC117597030 | NA | non-coding | upstream | 1108 | 498209 ~ 510003 (-) |
| G57811 | NA | non-coding | upstream | 4444 | 501545 ~ 708236 (-) |
| G57745 | NA | non-coding | upstream | 9993 | 507094 ~ 846016 (-) |
| LOC117597020 | NA | non-coding | upstream | 38764 | 535865 ~ 537721 (-) |
| G57816 | NA | non-coding | upstream | 47062 | 544163 ~ 826584 (-) |
| eif2b5 | eif2b5,LOC107671691,LOC107567864,LOC107660395 | other | downstream | 74438 | 279982 ~ 300017 (-) |
| LOC117596995 | LOC108268238 | other | downstream | 276338 | 84815 ~ 98117 (-) |
| G57830 | NA | other | upstream | 115142 | 612243 ~ 614243 (-) |
| G57838 | NA | other | upstream | 186387 | 683488 ~ 746031 (-) |
| G57740 | NA | other | upstream | 236454 | 733555 ~ 734771 (-) |
| G57868 | NA | other | upstream | 488810 | 985911 ~ 1048841 (-) |
| LOC117597039 | NA | other | upstream | 513124 | 1010225 ~ 1029025 (-) |
