G57811


Basic Information

Item Value
gene id G57811
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 501545 ~ 708236 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68339
ACAGGAGCAAGAGACACAGTACAGCACTGATACTTTCCAAGCAGCGCCGCCGGTGTCCTGCGCATCATTCCAGGTAACATCTATTGCATTTCAGCCCACATTAAGAACTGCTAACTCTACTCAAAACATGCTAACCCTAGCTAACTAGCACCAGTAATTCATCTTGCAAATAATAAGGTGAACTAAAACTGAAATTGGACAAGATGTgggtttgtttgtctttaattATCCTTAATTCATTCCTCATTATCTCCATCACTTACCGCTGTcctgtttcctcttttcctgctcttcttgttttctcttgtgCTTCTGGCTGCCAGATAGGTACAGTAtgtcctcttcatcttcaggaGTTAAAGCTCGTGCGACTCGAGTGTGGGGGGTGGCGCAGAAGCATAAAGTCACAAACGAGACAGCGCCCCTAAAGGGGGTTGCTGAGATGTTGCTGCGCATTATTTTAAGATGAAAATTTCTGATGATTTAAAAGATCAGCCCTCAGGGGCCTCTCAGAATGCGGGGCAGCAGGTAATTGCTGGCCTTGCCTGCTCTGTAGATACGCCTCTGCGTGCATGGATATTGCTACACAACAACACTGCaactattttgtttactttattacGGTAACTAGATcagaaaatatgtataaatcCAGATAGTTACTCACTGTTTTACAAATACATCTTTAGAATAAACTTTCTGCAGTATATAAATCTTAAGACTAAATagccaaatataaaaaaatgcctTCACACCCATGCATTCACaaatagattaataaaaataaattatacgcTAATATCACTAGTCTCAAAGTTACAAATTAAAAGAGATAGTTTACCCCAAAATGAAACTTGTCATAATATACACACTCTTATTTTGTTCCAAACCTGTTTGACTTTTATAAGGAGATGTAAGGCAGAACGTTAAGAGCCTCAGTCACCATTCACTATCACTGCCTCTTTCTTCTATAAAATACATGAATGGTGAGGAATGGTGTTCCACAAAAGAAACACATACAGGTGTGGAACAACATTAGTGTCAGTAGATCACAGGATTTTTAAACTCTACCTtacacagtaaacactttataaataaatgttacccTTGAAAACAGAGCACAGAGAAATATAGTGgataaattattttcctttgcagttaacatttatttctgaagtaGGGCAAGTTCTTTGCTCTTGCAGTATTCAGTTGGTCCCTTTGTTATGTTTCAATACACCTGAAGAGAACTTGGTGGTAGTCAGCCATCTACACAAT
>TU68340
ACAGGAGCAAGAGACACAGTACAGCACTGATACTTTCCAAGCAGCGCCGCCGGTGTCCTGCGCATCATTCCAGGTAACATCTATTGCATTTCAGCCCACATTAAGAACTGCTAACTCTACTCAAAACATGCTAACCCTAGCTAACTAGCACCAGTAATTCATCTTGCAAATAATAAGGTGAACTAAAACTGAAATTGGACAAGATGTgggtttgtttgtctttaattATCCTTAATTCATTCCTCATTATCTCCATCACTTACCGCTGTcctgtttcctcttttcctgctcttcttgttttctcttgtgCTTCTGGCTGCCAGATAGGTACAGTAtgtcctcttcatcttcaggaGTTAAAGCTTGTGCGACTCGAGTGTGAAGGGGTGGCGCAGAAGCATAAACAAGTCACAAACGAGACAGCGCCCCTAAAGGGGGTTGCTGAGATGTTGCTGCGCATTATTTTAAGATGAAAATTTCTGATGATTTAAAAGATCAGCCCTCAGGGGCCTCTCAGAATGCGTGGGGCAGCAGGTAATTGCTGGCCTTGCCTGCTCTGTAGATACGCCTCTGCGTGCATGGATATTGCTACATAACAACACTGCaactattttgtttactttattacGGTAACTAGATCAGAAAATATGTATAAACCCAGATAGCAAACTGACATAGAAGCAACACAGAATCgatgtctctctctgtcggCATGGAAACAGCGTTGATCTGTGACGTTGATCCAACATCTTTTTGCTTATCGAAGTCGTGTTGAACCAACGTCGTACACGCCACTGAAAACAAACGCAGAAGCGATGTCATTGGTTTGCTTAATGTACGCTGAAACGACTTCACACAATCAACGCATtttctaattgtttttaaactcgcaaatactcaaataaatagataaatcagccgatatatatataataattttttaaacacacatcacattccGTTACTCACTGTTTTACAAATACATCTTTAGAATAAACTTTCTGCAGTATATAAATCTTAAGACTAAATAGCCAAATATAGAAAAATGCCTTCACATCCATGCATTcacaaacagattaataaaaataaattataggCTAATATCACTAGTCTCAAAGTTACAAATTAAAAGAGATAGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68339 True 1275 lncRNA 0.38 2 695573 708236
TU68340 False 1141 lncRNA 0.39 4 501545 708236

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 179856 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 228925 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 316572 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 393451 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 417081 65830 ~ 84464 (-)
LOC117597015 NA coding upstream 2123 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 139837 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 155142 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 216798 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 228924 937160 ~ 942590 (-)
G57805 NA non-coding downstream 339 454842 ~ 501206 (-)
G57788 NA non-coding downstream 4444 374455 ~ 497101 (-)
LOC117597021 NA non-coding downstream 19470 481275 ~ 482075 (-)
G57800 NA non-coding downstream 22261 440278 ~ 479284 (-)
G57794 NA non-coding downstream 27287 388746 ~ 474258 (-)
LOC117597026 NA non-coding upstream 26685 734921 ~ 748267 (-)
G57843 NA non-coding upstream 43350 751586 ~ 752375 (-)
G57844 NA non-coding upstream 58969 767205 ~ 767558 (-)
G57848 NA non-coding upstream 114014 822250 ~ 825864 (-)
G57849 NA non-coding upstream 114544 822780 ~ 824304 (-)
LOC117597012 NA other downstream 3982 347059 ~ 497563 (-)
LOC117597013 NA other downstream 49852 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 201528 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 403428 84815 ~ 98117 (-)
G57740 NA other upstream 25319 733555 ~ 734771 (-)
G57868 NA other upstream 277675 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 301989 1010225 ~ 1029025 (-)
G58190 NA other upstream 984090 1692326 ~ 1692997 (-)
G58534 NA other upstream 1362788 2071024 ~ 2104011 (-)

Expression


Co-expression Network