G57818


Basic Information

Item Value
gene id G57818
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 553769 ~ 599202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68348
gcAACAAACCCCCACAATCCTAAACCTTTTGACTCCTTTCACCAAAATGACTCATTCAGGCCAGTAGGGGTCAGTGTTGTCTTTAATTTACCTGCTGCTGAGGTCTTTATTCTGGAGTTCAGTAGATAAACACGACTACACTGAGGAGAGACATGTAGCTACTGTAAATGGCAATAAAGCCAACtgttaaagtgttatttaaatacagagagacatataattaaattaaaaaaacattattatgagTGATTACTGAAAAGTATTAAACATTCTGTATCACTTTATTAAAGAGTCTGGGCTGATGCTGAAACGTGTTCTTTTGCATTAGTGAATACAGAGAcatatttgattaaataaataacaaataataagccatgaagaaagagaatatttatatggaacaagaagtgatgaagaagtgatattaatatctgaaAGGAATAAACTGTAAGACTGGCAGCTGAAGTCACTGGAGTCTGAACCACAGATCTGTGAGAATGAAATGCGCATGCGTGAGTTTTTGACACTCTTTTGATACAAGAGTTCAGCATGAACAGTACAATATGCGATTTGAGGTTGAAATGAAAACAGTTGAAAATAGGCCAGTTTATGATTTtgatgcgcacacacatacacagcccTCCACATAAATCGCGTTTACACAATTTAAAGATTCAAATTGTGTTCAATTGAATTCACCCAAACTGTGATCAGTTAGTTCCAAAAGcctttattattacattaccaTTGTCAGGCAGTAGAGGACGCTCATGCACAGTGTCTTCAGTGTTTTCTTACCATTTTCCTGGAAGGCCCCCAACACTGCATGGTGGATGTCTACCGCATCTTAAACACCCATTTCAGGACTTGAAGCAATTTCCTAGTAATCTGACGAGTTGAATCAGGTCTGTTAGATTAGGGAATGTGGAGTGATGGATCCAACCGCTTTCACTTTCAAACAGCATTCACAAGTGTGTTTAAGCACATTATCAAGATCACACACAGATATCATCTGACAAATGTTTGCAAACCTACATGTGCTGAATCATGTTGTGcttaatctgtatttatttacacatgacAATTTTACAGTACAGTCATAAATTTACCAAATACTACCCCGTCTCTGAAAGGAACAGTGGGGACCAAACATTGCATAATGTCCATCTGTACAATATGCTATAAGGGCTCTGAATAGTGGCCAAACTGTTATGTCACACGAATGGAGTGACAAAACACTCCTTTACTCGGCTCACTGGAAAAAACAATAGGCAGTCAGGTAAGACTGTATACAAATATGCAATGGTAAATAACGAAAAATCTTTCAGAAGCATTGTTGGGCCATAATCTACTATTTCAATTATACAATGGGCAaagagttttattaaaataggaacaacaatagaaaaaaaaaaaaaacaacacagttgGAATACAATGGAGTGAGAGGGAGAACTGCAGTTTGGAGCCTGAATGTGATGGTGAAATAGCTCCAGCTTCACGCACACAGTATTTCTGCAAGAGCTGGCAACAAAACACTTCATTAGAAATAATGTCATTGACCTCCTGGggaataaaaaaagacacaccCAGAGCTCCCCATCAAAAGCAATAACATTGCTGAAAACTCCAATATTCAAAACAGTGGTAGTCAGAGATGGAGTCAGGGACGTCAGTCATGGAATGTGTCTTAAATTAAGAGAGCCTTGGTGAGCAGCTGCAGCACTATCCAATGGAGATAAATAATCAGCTGCATACTGGAAACGTTTAAATGCTGGTTTCACTTGGCTGCTATTTAGATATTAAAAGTAAAGGCTAAGATTTCCTTGAGTCGCCAATGTTTTTCAGCAGgagtgctgttgtgtgtgtctccatGGTTTAAGCATGCTGGTGGAGGAATAGTCTGAAATGTTGATGGCAGACGCGTTGACGTGTCTGGAGCAGTCAAATGGGGTATCTATGTATAGATATCTATGGGAATAACTAGTAGCCAATTAGCTTGACTTGTAACCCATTTTGCTGTGGACATTCTGCTAAGAGAGGCAGGTTGTTCTACCTTTTCAGGCATCTTGCTTCTcccttgtgcacacacactcacgaaTAGCCTTTGTTGGACTGCTGTACGGAGACGTCACTGCGTATGTGGTGCGGTTCCTTTCACTTCATGCCAGCCCCATTCAACTGCACACCACTGCTGAATGTATATAGGGGAAACACTGCTTTGTGCCATTCACCTGCCACCCTCTAACACTGATACTTGGACCTTCCAAACCAGCCAAATGTGTTGAGGAAATCCTTAACAGATGAACACCAGCAAAAATAATGGtacatcaaaaaaataaaaaaatcagtaaacaaTAGGGCTGCAATGGTACGTGTATGGATACAGGTACACACAAGGACACGAATGGCTACATGTATGGGCATGCGAGAAACCATAAACAAACAAGCGCTCCTCACATGACAGGTAAAAGGCTACTGACCTGTGTTAGTTTGTGGTGTACACTGGCAGGACTTTGCTGAAGGGAATCCTGACCAACCAGTTATATGATCATTTCATGGCATTCAGTGTTGCTGAGGTGAAGCACTTTTCCAATATGCATGTCACTAGAAAGGAAGATGGGGAAACAGGTAAGATGTTTACAATCTCATACATTATATATCTCATACTTGACACGGCCAGTGTAATATCTAggtaagacaaataaaacaagacaactACAATTATATAACAGGGCAAACATGAGTCTTTCGGACCCTTTGCACTTCCACAatcataatttcttttttttaatgtcatggatGACTAAAAAGTAATAGAACTCACAAAATTTCAGCAATAAGTTGACCCAATGTTTTTTTCAACTGCACACCAAAAACTAATACTGAATCAACAGCTTTATTCAACAACaaacaatatacacacatctaataaacataataaacatatgGATGCCCCAAGtacctggcaaaaaaaaaacaaaaaaacaaaactagtcAAAACTGCTAGTGAAGTTTCTAATACAGTTGCTGAGGAAGTGACTGATAAAGTGataatttttctctcttctgacTGTTGTAATCCATCCCTCTATATTTTCTCCCTCTGTCAGAAAGTTGTGGAAACACCATAgtggttttttcttttcttttttctattttcggTTACTCAATAACAACAGCCCGACTGGATCGGTTACTCAATgacaacagccgactggatGCGGTTACTCAGTgacaacagccgactggatCG
>TU68349
gcAACAAACCCCCACAATCCTAAACCTTTTGACTCCTTTCACCAAAATGACTCATTCAGGCCAGTAGGGGTCAGTGTTGTCTTTAATTTACCTGCTGCTGAGGTCTTTATTCTGGAGTTCAGTAGATAAACACGACTACACTGAGGAGAGACATGTAGCTACTGTAAATGGCAATAAAGCCAACtgttaaagtgttatttaaatacagagagacatataattaaattaaaaaaacattattatgagTGATTACTGAAAAGTATTAAACATTCTGTATCACTTTATTAAAGAGTCTGGGCTGATGCTGAAACGTGTTCTTTTGCATTAGTGAATACAGAGAcatatttgattaaataaataacaaataataagccatgaagaaagagaatatttatatggaacaagaagtgatgaagaagtgatattaatatctgaaAGGAATAAACTGTAAGACTGGCAGCTGAAGTCACTGGAGTCTGAACCACAGATCTGTGAGAATGAAATGCGCATGCGTGAGTTTTTGACACTCTTTTGATACAAGAGTTCAGCATGAACAGTACAATATGCGATTTGAGGTTGAAATGAAAACAGTTGAAAATAGGCCAGTTTATGATTTtgatgcgcacacacatacacagcccTCCACATAAATCGCGTTTACACAATTTAAAGATTCAAATTGTGTTCAATTGAATTCACCCAAACTGTGATCAGTTAGTTCCAAAAGcctttattattacattaccaTTGTCAGGCAGTAGAGGACGCTCATGCACAGTGTCTTCAGTGTTTTCTTACCATTTTCCTGGAAGGCCCCCAACACTGCATGGTGGATGTCTACCGCATCTTAAACACCCATTTCAGGACTTGAAGCAATTTCCTAGTAATCTGACGAGTTGAATCAGGTCTGTTAGATTAGGGAATGTGGAGTGATGGATCCAACCGCTTTCACTTTCAAACAGCATTCACAAGTGTGTTTAAGCACATTATCAAGATCACACACAGATATCATCTGACAAATGTTTGCAAACCTACATGTGCTGAATCATGTTGTGcttaatctgtatttatttacacatgacAATTTTACAGTACAGTCATAAATTTACCAAATACTACCCCGTCTCTGAAAGGAACAGTGGGGACCAAACATTGCATAATGTCCATCTGTACAATATGCTATAAGGGCTCTGAATAGTGGCCAAACTGTTATGTCACACGAATGGAGTGACAAAACACTCCTTTACTCGGCTCACTGGAAAAAACAATAGGCAGTCAGGTAAGACTGTATACAAATATGCAATGGTAAATAACGAAAAATCTTTCAGAAGCATTGTTGGGCCATAATCTACTATTTCAATTATACAATGGGCAaagagttttattaaaataggaacaacaatagaaaaaaaaaaaaaacaacacagttgGAGTACAATGGAGTGAGAGGGGAGAACTGCAGTTTGGAGCCTGAATGTGATGGTGAAATAGCTCCAGCTTCACGCACACAGTATTTCTGCAAGAGCTGGCAACAAAACACTTCATTAGAAATAATGTCATTGACCTCCTGgggggaataaaaaaaaaggacacccAGAGCTCCCCATCAAAAGCAATAACATTGCTGAAAACTCCAATATACAAAACAGTGGTAGTCAGAGATGGAGTCAGGGACGTCAGTCATGGAATGTGTCTTAAATTAAGAGAGCCTTGGTGAGCAGCTGCAGCACTATCCAATGGAGATAAATAATCAGCTGCATACTGGAAACGTTTAAATGCTGGTTTCACTTGGCTGCTATTTAGATATTAAAAGTAAAGGCTGAGATTTCCTTGAGTCGCCAATGTTTTTCAGCAGgagtgctgttgtgtgtgtctccatGGTTTAAGCATGCTGGTGGAGGAATAGTCTGAAATGTTGATGGCAGACGCGTTGACGTGTCTGGAGCAGTCAAATGGGGTATCTATGTATAGATATCTATGGGAATAACTAGTAGCCAATTAGCTTGACTTGTAACCCATTTTGCTGTGGACATTCTGCTAAGAGAGGCAGGTTGTTCTACCTTTTCAGGCATCTTGCTTCTCCCTTGTGCGCACACACTCACGAATAGCCTTTGTTGGACTGCTGTACGGAGACGTCACTGCGTATGTGGTGCGGTTCCTTTCACTTCATACCAGCCCCATTCAACTGCACACCACTGCTGAATGTATATAGGGGAAACACTGCTTTGTGCCATTCACCTGCCACCCTCTAACACTGATACTTGGACCTTCCAAACCAGCCAAATGTGTTGAGGAAATCCTTAACAGACGAACACCAGCAAAAATAATggtacatcaaaaaaaaaaaaaaaaatcagtaaacaaTAGGGCTGCAATGGTACGTGTATCCGTACCAAACTGAATGGATACAGGTACACACAAGGACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68348 True 3256 lncRNA 0.39 2 553769 599202
TU68349 False 2427 lncRNA 0.39 2 554618 599202

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 232080 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 281149 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 368796 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 445675 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 469305 65830 ~ 84464 (-)
LOC117597018 NA coding upstream 100847 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 111157 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 248871 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 264176 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 325832 925034 ~ 933915 (-)
G57763 NA non-coding downstream 4764 354007 ~ 549005 (-)
LOC117597020 NA non-coding downstream 16048 535865 ~ 537721 (-)
G57810 NA non-coding downstream 34784 492652 ~ 518985 (-)
LOC117597030 NA non-coding downstream 43766 498209 ~ 510003 (-)
G57792 NA non-coding downstream 49888 381065 ~ 503881 (-)
G57828 NA non-coding upstream 420 599622 ~ 600276 (-)
G57761 NA non-coding upstream 1424 600626 ~ 674488 (-)
G57831 NA non-coding upstream 19083 618285 ~ 742153 (-)
G57832 NA non-coding upstream 20503 619705 ~ 620138 (-)
G57823 NA non-coding upstream 41475 640677 ~ 748600 (-)
LOC117597012 NA other downstream 56206 347059 ~ 497563 (-)
LOC117597013 NA other downstream 102076 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 253752 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 455652 84815 ~ 98117 (-)
G57830 NA other upstream 13041 612243 ~ 614243 (-)
G57838 NA other upstream 84286 683488 ~ 746031 (-)
G57740 NA other upstream 134353 733555 ~ 734771 (-)
G57868 NA other upstream 386709 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 411023 1010225 ~ 1029025 (-)

Expression


Co-expression Network