G57823


Basic Information

Item Value
gene id G57823
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 640677 ~ 748600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68359
tagaaatgaaatttGGATATATTTTAGAGTAGTCAATGTGCTGCTTGTATAGCAGTATAGATTTATTGTCATGTAAAAATGACTTAACATACAGCCATTATTGTCAAAATAGCTGGCAACATAAGTGAGTACACCCTGAGTGATAACGGCTGTACGTCGTTTAACCATGCAAAGCCACATGTCCTattcatcatgttcatgtttttgtctCCTTGACAGGACCATACAAATTTGTGTATCTTGTATTGGAGCAGTTAAAATTTGGTGCTTTGAGTACAATTCTCTCATACTGACCACTGCATGTTGAACATGGCGCCTCATGCCAAAGAACTCTCTGAGGATTTGAGAATTAGAATTGTTGCTCTCCACAAAGATGGCCTAGGCTATAAGAAGATCGGTAACACCCTGAAACTGAGTTACAGTACAGTGGCCAGAGTCATACAGAGGTTTTCCAAGATGGGTTCCACTCAGAACAGCCCTCGCAAGGGTCGATCTAAGAAGTTGAGTCCTCATGTTGTGCGTCAGGAGGAGCAGTGAGATTACTCGCAGTGTCAGGAGCAGTAAACAGCGGCTATAAACACAGCAGTGAAGTCCCTTGGTAGATAATAGGGACGGCATTTCAGCAATAAAAACTCCACATCTGGCGAGCAGTGCTTATAAACAGTCTGTATGTCTCCACACCACGAGTTgttgataaacacacacacacctcctcggTGTAAGGAGTGAGACTGTAGCTGAACAGAGGATTCCGGTACTTTCTCTGAGAGCCAGGTCTCAGTAAAAATCAGAGCATTCTCAAGTGAATGAAGCAGCTCAAgtgagtctccatccacatctgaaggaagtctcatcaaccaagagctttagaagttcttACCCCTTGAGATCAcgaggagatcacgcttgctccgagactccgcatccagactggttcctgcaaagcctccaactctcgccttcTCACCGCTGTGAACCAGGGTTAGGGTTCTTCAAAGTTTAGCAACCCGCCTACgagactccgccgggttcgtgcctcactctgtttatcttcctcattggtctttcgagacgctacataaggccaaccagaccgccgaccaatcaacatcgccggaaactccttccaaacaacaacgcaacgagggaatccctggcaacacaaacgcaagtatagtacctccagattctcctCGGAAGAAAAAGCAGCAATAAAACCGGAAGTGAAGTCCGTCACGTGACTGCGGTTAAGCCAGCCGTTCTTCCTGAAAGGCTTTTACGCACTTAATTTTAACTTAAaattactaattaataataataataagctatgataaaagttataataaatgtgttttttttaaatcacaatatAATCATAAAGCTAAAGCGGCAGTAAAACCGGAAGTGAAGGCCGTCAGGAGccattctgttgttgttgtttagccTGAGATAGCTAGCTCACTACATTAACGCTATTTTCTCTAGTAAATACACCACCGTTTGGCGTTtattagcaaaaacaataaaaacactaaacactactcAAAATAACAATCCGGTATTTCTGTACAACTATTTACAGAACTATTTACTGTcgggtgttttatttatttatttatttattttttttccattttacagAAACTCTTCATGACGAGTTTATTAAAAGTGCAGCTCTGTATTAACACACAAACTCATCTCAGTCgcttaaactgtaatatttatataacatttgtgTGTTATAATATCTGTAATTAACTCACTGTGTGAAGGTTAAACACTCGCTCCTCCTGCGTGCTGAAGCTCCTCCTGCGTGCTGCGtgtcggtaccgttactcccgtcGTTCGTTCTGTTGTCAAGTGACGTGACAGCACTGGA
>TU68361
CTGAAGTGAAGTCCGTCACGTGACTGCGGTTAAGCCAGCCGTTCTTCCTGAAAGGCTTTTACGCACTTAATTTTAACTtaaaattactactactactaataataataataagctatgataaaagttataataaatgtgttttttttaatcacaatataATCATAAAGCTAAAGCGGCAGTAAAACCGGAAGTGAAGGCCGTCAGGAGccattctgttgttgttgtttagccTGAGATAGCTAGCTCACTACATTAACGCTATTTTCTCTAGTAAATACACCACCGTTTGGCGTTtattagcaaaaacaataaaaacactaaacactactcAAAATAACAATCCGGTATTTCTGTACAACTATTTACAGAACTATTTACTGTcgggtgttttatttatttatttatttttttccattttacagAAACTCTTCATGACGAGTTTATTAAAAGTGCAGCTCTGTATTAACACACAAACTCATCTCAGTCgcttaaactgtaatatttatataacatttgtgTGTTATAATATCTGTAATTAACTCACTGTGTGAAGGTTAAACACTCGCTCCTCCTGCGTGCTGAAGCTCCTCCTGCGTGCTGCGtgtcggtaccgttactcccgtcGTTCGTTCTGTTGTCAAGTGACGTGACAGCACTGGA

Function

NR:

description
PREDICTED: embryonic polyadenylate-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68359 True 1879 lncRNA 0.42 4 640677 692268
TU68361 False 660 lncRNA 0.36 4 640677 748600

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 318988 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 368057 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 455704 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 532583 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 556213 65830 ~ 84464 (-)
LOC117597014 NA coding upstream 99473 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 114778 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 176434 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 188560 937160 ~ 942590 (-)
LOC113524140 NA coding upstream 196444 945044 ~ 961033 (-)
G57832 NA non-coding downstream 20539 619705 ~ 620138 (-)
G57821 NA non-coding downstream 21822 559634 ~ 618855 (-)
G57828 NA non-coding downstream 40401 599622 ~ 600276 (-)
G57818 NA non-coding downstream 41475 553769 ~ 599202 (-)
G57755 NA non-coding downstream 45481 552099 ~ 595196 (-)
G57843 NA non-coding upstream 2986 751586 ~ 752375 (-)
G57844 NA non-coding upstream 18605 767205 ~ 767558 (-)
G57848 NA non-coding upstream 73650 822250 ~ 825864 (-)
G57849 NA non-coding upstream 74180 822780 ~ 824304 (-)
G57850 NA non-coding upstream 78721 827321 ~ 841661 (-)
G57830 NA other downstream 26434 612243 ~ 614243 (-)
LOC117597012 NA other downstream 143114 347059 ~ 497563 (-)
LOC117597013 NA other downstream 188984 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 340660 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 542560 84815 ~ 98117 (-)
G57868 NA other upstream 237311 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 261625 1010225 ~ 1029025 (-)
G58190 NA other upstream 943726 1692326 ~ 1692997 (-)
G58534 NA other upstream 1322424 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 1455952 2204552 ~ 2222099 (-)

Expression


Co-expression Network