G57826


Basic Information

Item Value
gene id G57826
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 574040 ~ 808757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68364
CAGATCCACAGTTTGTTCAAAACAAGTTTCACATTACATTTATctgtattacaaaataaaatatgaacacgaatgtaatataaaatacaaattttattatCCATGTACAAAATGTCTtctgtaacaaacacaaaacatagaATTTATATTGTACATAAAAACAAGCCATGCAAGTAAAAGCTAACTGTGAACAAGTCTCCTTGATCATTGTAGGCAGCGTGATCTAAAGCTGTCCACTTGCTCACTATATAATACTGTAATTAGTGAAAAGTTCCCTGCTGTCACTCATCAGACACATCGTTAGATTGGAAAGACATCAGTGTTACAGTATTACACACTGTGTTTATAAACACATCTCCTCCAATCACTTGCAGTTAAACCATTCTGACTTTCATCTCCCAGTTCACGCCCcaatgtgttgtgtgatgatCAGCTGTTGCCTGCTTCTTTACACTTCAACAACGCTCTGCACCCGTGTGAAAGGAGGAGGCAGTAAACTGTGTTTATCATTAAAATTTCCAGAAGATGcaatacctttaaaaaaaatcacaactgtttattacagtaCGTCTCCTTGTTGTGTCAGCACCTTTAGTGGTGTACTATTGTACATacagctacactacactaccaTTTCTGACTCTTAATGAAATGGTCATTTTCATGCCAGTCTGTTTAAACATTCTGCTtgtcaattaattaaattaatttaattaatgctacgctccctccactggctttctGTATGCTTAGATCCTCCCTCACAATCTCTAGTCATGATGCTACAGATAACCCTCTCAAAAGACTACACTTAGAGTATGTtattcttctacttcttctcaTGTGCACTGAACATCTTGCAGTGAAATTAACTGAAAAAGAGCCTGTATAAACAGACTGCCATGAAAACGACCACTTAGTTCACATTAgtcagaaatgataatgtagtCTCTACCAGTGAAAGtatttcatgctttttatcttttaaaatgtatttaaaataaaatattgtgtcTCTTCAACATGTAAAAAGCACCAGTATTTAGTACACTTTAAGACGTCACTTCATCAgtatataaatcatttacatttacaataaaacagttAGGTAGGTAAGGTGATGCTGGTAAAACCTGTGATGGCTATTATTTTGCTATttcacatctagatgtaaatttcaggaaattaaagctgaaattctgatctatcgtctcatattcatcttttgatctcaaaaccCAACTGTCATCAGTGTttagcaaaaacaacagaatgggTCTTGCTGTTCCAGgactttcagaggagactgtataTAGAACTGAAGTGGGCATTTTTTTGTGACTGGCTGTCAGTCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68364 True 1358 lncRNA 0.35 2 574040 808757

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 252351 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 301420 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 389067 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 465946 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 489576 65830 ~ 84464 (-)
LOC117597014 NA coding upstream 39316 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 54621 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 116277 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 128403 937160 ~ 942590 (-)
LOC113524140 NA coding upstream 136287 945044 ~ 961033 (-)
G57763 NA non-coding downstream 25035 354007 ~ 549005 (-)
LOC117597020 NA non-coding downstream 36319 535865 ~ 537721 (-)
G57810 NA non-coding downstream 55055 492652 ~ 518985 (-)
LOC117597030 NA non-coding downstream 64037 498209 ~ 510003 (-)
G57792 NA non-coding downstream 70159 381065 ~ 503881 (-)
G57848 NA non-coding upstream 13493 822250 ~ 825864 (-)
G57849 NA non-coding upstream 14023 822780 ~ 824304 (-)
G57850 NA non-coding upstream 18564 827321 ~ 841661 (-)
G57742 NA non-coding upstream 48990 857747 ~ 861437 (-)
G57861 NA non-coding upstream 100760 909517 ~ 910029 (-)
LOC117597012 NA other downstream 76477 347059 ~ 497563 (-)
LOC117597013 NA other downstream 122347 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 274023 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 475923 84815 ~ 98117 (-)
G57868 NA other upstream 177154 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 201468 1010225 ~ 1029025 (-)
G58190 NA other upstream 883569 1692326 ~ 1692997 (-)
G58534 NA other upstream 1262267 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 1395795 2204552 ~ 2222099 (-)

Expression


Co-expression Network