G57831


Basic Information

Item Value
gene id G57831
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 618285 ~ 742153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68369
CGTCATTTGGATCGTAACGGCCAACTGCCGCTTCACGCTGAGGTAAAGTTAAgcgaaaatatatattttgttcgCCGCTTTAATACAGTGGTTTCACTGtgtaatgttaaatatcatGTTAGAGTTGTAATGGTTTATATTTTGAAGCTTTTATAACGCTTCATAATTGTGTAATTTATCGTCGTGTTTGCGCGCATGAGCTAAAGCAGCAGCTAACTCTGAGGTAAACTTTACAACCGTTTTAGTTATTTAAACTGGCAACTTCAGCACGATAAACTTGACATTTATCACTTTCTAACTGTATTATTTGTTAGACTTTAAGGCAGTGAGGTGATTTCGAGTGGAAATGAGGCACAGAACTCTGTTAAAGCCTTTCTCAGAAGCTCCATGACGAGGCTGCGATGGTGTTTGGGTGTAGCAGCCTTTAGAACGGGGGGTTTCATGTCCCGctcacatttacagaaataatcatttcattttaacaacTTTATTCTGATTAATCGCAGTTTAGCCGTTCGCGTAACCCGAAGGCTTTAAGACCCTGCAGAAGCCT
>TU68370
TGGGAGAGTTTGTAGACCTCCTGGCCATTTAAGGGGTTTTGTTCTGTATTGAAGTAACTGTTTGCCTGTGTGTATGGGAGAGTGCTAGTAGGATTTTGTTCTATTGCTGAGCCTGTTGTTTctatacaaaaagaaagaactaGAGTTtggaaaatgggggaaaatttACTGTGTcaactttggaaaaaaaaaaaagtgttaggtGGTAAAAGAAATGtgttcaaacaaacaaagctgGAAATATATATGGGGGGAATGCTGTGTTCTATTAGCAGGCTTGTTGCCATGTTACGAATGTGCTCTGTACTTTGTTTTGTGTCTTATTGTACACAGATGTTtattgtttctgaatgttgacCTTGTTATTCTGGCACATAAATGGGGACGTTTATTTTGTGAGGGGGGGACGTATGTAACAGACTTTATTCGATTCTGTTATATTGCACTAATTGTGGATGTACTGGCgctcgttgtgtgtgtgtgtgtaatgtatttttCCGCTCGTGGCTTGCCGTAGATAGACAATGGGCATGCGCACTTTTGGCGCGCTAGAGTGTCACAGGTTTTTGGAGTTCTctctggtgtgtgttggagaatgAAAAGTTAAGAAGAGTTCGGATGTTCTCGTTTATTGTTTTCTTATCCATAAGTGTTTAGGCAAACCCTGCACGAACGCTCGGTCACAGAACGAACGACTCGAAAGACtcgagagatgaactaatcaattctctttccggcTAAGACTGCACTGGTTAAGCTCATGGGGCTGTCACGTGATGAACGAACGACTCAGACCCGAAGACTTGTCAGATAAGAGGCGAGGTGAGCTAATCATAGACTAAAGATCCaggtaaacaatgaattaatgttttctgtttcttatagcattatagttttgtcttgtttgtagtgTGATCAACGTTTGCGTAAGTAGTAGATGTGTTAGGGAAGTAAcacgtaacattttaattatattttgctaaaatgaacaaaatgaacgAAATGACTCGAAAAAAGATTCGTTCATTTTGCTGAACGAGACTCAAAGGTCCGAGTCGGTGAAATGATCCGAACTTCCCATCACTAAGCAACACTCACTGTTCGCTCGCTTTATCAGGACCAACACAAAGCAGCTATTCTGAGTTCTGCGCATGCGCGTCATTTGGATCGTAACGGCCAACTGCCGCTTCACGCTGAGGTAAAGTTAAgcgaaaatatatattttgttcgCCGCTTTAATACAGTGGTTTCACTGtgtaatgttaaatatcatGTTAGAGTTGTAATGGTTTATATTTTGAAGCTTTTATAACGCTTCATAATTGTGTAATTTATCGTCGTGTTTGCGCGCATGAGCTAAAGCAGCAGCTAACTCTGAGACTTTAAGGCAGTGAGGTGATTTCGAGTGGAAATGAGGCACAGAACTCTGTTAAAGCCTTTCTCAGAAGCTCCATGACGAGGCTGCGATGGTGTTTGGGTGTAGCAGCCTTTAGAACGGGGGGTTTCATGTCCCGctcacatttacagaaataatcatttcattttaacaacTTTATTCTGATTAATCGCAGTTTAGCCGTTCGCGTAACCCGAAGGCTTTAAGACCCTGCAGAAGCCT
>TU68371
AACGCTTCATAATTGTGTAATTTATCGTCGTGTTTGCGCGCGTGAGCTAAAGCAGCAGCTAACTCTGAGGTAAACTTTACAACCGTTTTAGTTATTTAAACTGGCAACTTCAGCACGATAAACTTGACATTTATCACTTTCTAACTGTATTATTTGTTAGACTTTAAGGCAGTGAGGTGATTTCGAGTGGAAATGAGGCACAGAACTCTGTTAAAGCCTTTCTCAGAAGCTCCATGACGAGGCTGCGATGGTGTTTGGGTGTAGCAGCCTTTAGAACGGGGGGTTTCATGTCCCGctcacatttacagaaataatcatttcattttaacaacTTTATTCTGATTAATCGCAGTTTAGCCGTTCGCGTAACCCGAAGGCTTTAAGACCCTGCAGAAGCCT

Function

NR:

description
cytochrome c1, heme protein, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68369 False 553 lncRNA 0.40 2 618285 631308
TU68370 True 1618 lncRNA 0.41 4 618285 742153
TU68371 False 399 lncRNA 0.42 2 618285 740842

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 296596 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 345665 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 433312 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 510191 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 533821 65830 ~ 84464 (-)
LOC117597014 NA coding upstream 105920 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 121225 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 182881 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 195007 937160 ~ 942590 (-)
LOC113524140 NA coding upstream 202891 945044 ~ 961033 (-)
G57828 NA non-coding downstream 18009 599622 ~ 600276 (-)
G57818 NA non-coding downstream 19083 553769 ~ 599202 (-)
G57755 NA non-coding downstream 23089 552099 ~ 595196 (-)
G57820 NA non-coding downstream 30882 557142 ~ 587403 (-)
G57827 NA non-coding downstream 35847 581834 ~ 582438 (-)
G57843 NA non-coding upstream 9433 751586 ~ 752375 (-)
G57844 NA non-coding upstream 25052 767205 ~ 767558 (-)
G57848 NA non-coding upstream 80097 822250 ~ 825864 (-)
G57849 NA non-coding upstream 80627 822780 ~ 824304 (-)
G57850 NA non-coding upstream 85168 827321 ~ 841661 (-)
G57830 NA other downstream 4042 612243 ~ 614243 (-)
LOC117597012 NA other downstream 120722 347059 ~ 497563 (-)
LOC117597013 NA other downstream 166592 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 318268 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 520168 84815 ~ 98117 (-)
G57868 NA other upstream 243758 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 268072 1010225 ~ 1029025 (-)
G58190 NA other upstream 950173 1692326 ~ 1692997 (-)
G58534 NA other upstream 1328871 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 1462399 2204552 ~ 2222099 (-)

Expression


Co-expression Network