G58263


Basic Information

Item Value
gene id G58263
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 1946349 ~ 1977853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68926
TCTGATGGCGGATGGATACCATAAAACTCTCAGAATAAAAACCTAAAGTTACCGAAACTACTTACAGCATTGCACCAGTGTTGGAAAGTTACAGATTAAAGTCCATAAGAAGAGATTTGAGCAGTCATGTTCTTCCGCTGTCTCCTGCTGGTTCTCGTCTGCCTTCAGGATTTCACAGTAGCTGAGAATGCAGGTGAACAAGGACCATGCTGTTTCAGTTACCAGACACATCGAATCCCTttttACCCTAAAGAGCGGCCGTATTGTGTGTGCAGACCCCGACGTCAAactcCGGGGTTGACTGAgtgaaaaacaacatgaaatcaGTTGATCAGCGTCTGTTTAAAAGCTCAATTATCACTGATTAAATCTTTTCTCCAACCTAATTATTGGATGAAACAGTAACAGAATAAAGCTTTTTCTTataaatcatctttaaacatgaCGAATTGCTTGAATGCTGTATTCAATATGCTGTAGTTAAAGTTcagtttaatattcattatttcctttttttgtttaaataaaaccgcatattaatataaattaatgtttGTTGCATTCAGTAAGATTGAAAAGAGTCACTCGAAACTATACGTAAATAAGCcgtaataatacataaataactttatatttgtttattgttacattaataaattaataattaataaattatttattgaaattaatTCAATATTGC
>TU68928
TTTCATGGTTATCAGTGTAGTCATGTGGCTCTGATGGCGGATGGATACCATAAAACTCTCAGAATAAAAACCTAAAGTTACCGAAACTACTTACAGCATTGCACCAGAGTTGGAAAGTTACAGATTAAAGTCCATAAGAAGAGATTTGAGCAGTCATGTTCTTCCGCTGTCTCCTGCTGGTTCTCGTCTGCCTTCAGGATTTCACAGTAGCTGAGAATGCAGGTGAACAAGGACCATGCTGTTTCAGTTACCAGACACATCGAATCCCTttttACCCTAAAGAGCGGCCGTATTGTGTGTGCAGACCCCGACGTCAAactcCGGGGTTGACTGAgtgaaaaacaacatgaaatcaGTTGATCAGCGTCTGTTTAAAAGCTCAATTATCACTGATTAAATCTTTTCTCCAACCTAATTATTGGATGAAACAGTAACAGAATAAAGCTTTTTCTTataaatcatctttaaacatgaCGAATTGCTTGAATGCTGTATTCAATATGCTGTAGTTAAAGTTcagtttaatattcattatttcctttttttgtttaaataaaaccgcatattaatataaattaatgtttGTTGCATTCAGTAAGATTGAAAAGAGTCACTCGAAACTATACGTAAATAAGCcgtaataatacataaataactttatatttgtttattgttacattaataaattaataattaataaattatttattgaaattaatTCAATATTGC

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU68926 False 700 lncRNA 0.33 5 1946349 1977853
TU68928 True 729 lncRNA 0.34 5 1946349 1949582

Neighbor

gene id symbol gene type direction distance location
usp14 usp14 coding downstream 68363 1868861 ~ 1877986 (-)
LOC113524143 crhr2,LOC101476678 coding downstream 189276 1693077 ~ 1757073 (-)
LOC113524144 LOC101884462 coding downstream 305377 1640406 ~ 1640972 (-)
LOC113524132 LOC108267106,LOC108267072 coding downstream 311932 1605954 ~ 1634417 (-)
LOC113524094 LOC108267072 coding downstream 360566 1576183 ~ 1585783 (-)
trnav-cac_1 NA coding upstream 22125 1999978 ~ 2000050 (-)
LOC113524114 NA coding upstream 28256 2006109 ~ 2022196 (-)
LOC113524113 NA coding upstream 58899 2036752 ~ 2043739 (-)
LOC113524112 NA coding upstream 67309 2045162 ~ 2056716 (-)
LOC113524117 NA coding upstream 79619 2057472 ~ 2081756 (-)
G58209 NA non-coding downstream 1545 1938950 ~ 1944804 (-)
G58202 LOC108267091,LOC108439989,LOC102776977 non-coding downstream 116853 1794768 ~ 1829496 (-)
G58189 NA non-coding downstream 254123 1691346 ~ 1692226 (-)
LOC117597169 NA non-coding downstream 264340 1678327 ~ 1682009 (-)
G58144 NA non-coding downstream 304252 1641832 ~ 1642097 (-)
G58276 NA non-coding upstream 394 1978247 ~ 1978543 (-)
G58537 NA non-coding upstream 88918 2066771 ~ 2096126 (-)
LOC113524119 NA non-coding upstream 108006 2085859 ~ 2086780 (-)
LOC113524118 NA non-coding upstream 112747 2090600 ~ 2092014 (-)
LOC117597186 NA non-coding upstream 250393 2228246 ~ 2230981 (-)
G58190 NA other downstream 253352 1692326 ~ 1692997 (-)
G57868 NA other downstream 897508 985911 ~ 1048841 (-)
LOC117597039 NA other downstream 917324 1010225 ~ 1029025 (-)
G57838 NA other downstream 1200318 683488 ~ 746031 (-)
G58534 NA other upstream 93171 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 226699 2204552 ~ 2222099 (-)
trnag-ucc_1 NA other upstream 680150 2658003 ~ 2658074 (-)
trnag-ucc_2 NA other upstream 688914 2666767 ~ 2666838 (-)
trnag-ucc_3 NA other upstream 694047 2671900 ~ 2671971 (-)

Expression


Co-expression Network