G58696


Basic Information

Item Value
gene id G58696
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2814990 ~ 2817550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69489
TGCAGAACCACAGTGATGATTCTAGAATCTTCTAGGAAGATTTTAGAACCGCATTGGGAAAGATTATCTCTTTGAGAACCTTTGCTGTGGTTCTAGAATATTCAGAGAGCATCACACTAGAAAGAGTTTCACAGCTCTGAGAATTCTAGAATCACAGTGTTGACTCTAGAACTGAGACTAACATAATGTTGAGGACTGTAGAACCACAGTGAGGATTCTAGAACCTCATTGGGAAAGACTATCCACTCTGAGGATCAATATTCAGAGtgcatcacactcacacacagactttcATCACTCTCAGGATTCTAGATCCACAGGGAAGATTCTAGAACCACAGGGAAGATTCTAGAACCATGCTGGTGAGAGTAATAACACTCTGAGAATCCTAGAACTGAATCAAAGATTCAAGAAGCACATTATGGAGGGGGGACTATCCTCACTCACTGAAGATTTTAGAAGTCTCTAGACCACTTTTTTTCCATCATGTCATCTCAGAACATCACCAGGGAGACTATCACCATCCTGAGGACTCTAGAACCACAGTTAAGATTGTTGAGTAATGCTGGGAGGACCATAATCAGTCTGAGGATTCTAGAATTACAGTGATGACTCTAGAACTGAGACTAACATAATGTTGAGGACTGTAGAACCACAGTGAAGGATCTAGAATTACTCTGGGGAGACTAGCGTCGCTCTGAAAATTGTAGAACCACAGTGAAGGATCTAGAATTACTCTGTAGAACCACGGTGAAGGATCTAGAATTACTCTGTAGAACCATGGCGAAGGATCTAGAATTACTCTGGGGAGACTAGCGTCGCTCTGAAGATTGTAGAACCACGGTGAAGGATCTAGAATTACTCTGTAGAACCACGGTGAAGGATCTAGAATTACTCTGTAGAACCACAGTGAAGATTGTTGAACCATGTTCGGGAGACTATATCCACTCTGAAACTGAATCTAGAACCACTAACCACTTCATGAGCAATTTGATGTCGTGAAAAGAACATCACTAGATTAAGATCCAAAGAATCTCATTCTGTGTTAAACACAGGTTTCAAGTCACTGttaaagaaggaactcagggAGAACGTGATCCATAGAACCAACCACTAGCCTTGTTAGCGTCTAGGCATTGGCCAATCGTTTATCACGGTTTGCGAAATTTTgttatagagaaaaaaataagctACACCTGACAGTTTCACTCTCGTTGCCTGGTGAACAGGATTATGGGATTGTCCTCCTAgagaatgacacacacactgctgtttcgTTGCTAGTCCCAAATTAGGAACCTCAGAAGACAAGAGTCTGCATTTGGTCTTTCGAATGGATCAAAGTCCAAAAACGTCGGCTATCCAGCGCAGCCTCTTTCCGAATGAAACTGTCTACGATAACATATCGCATGTCTGGAATATCACGAAGCTTCTGTTTGGCTGTCGACGttatgaatgaacacaaaaccTGTGCAGCAAAATCAGTAAAATCAGTAAAATCATTCTAACGAATCTAAATGAACCAAAAGAaccaaatttaacaaaaaaaaaaaaaaaaaaaaaaaaagaaatgcaacaaCTGAACACAAAAAGACATGTTTCCAGacaaagagaacatttttttggggggttctAGAGTGAAACTGTTGGCTCTAGAATCCACGCTGAAGATTCTAGAACTATGCTGTGCATTAAAGAACGAGCCTGAAGATTTGAAAACCACACTACTTATTCTAGAACCACAGCAAAGACACAAGAACCATCATCACTCTAAGGATTCTGGAACCAAAGTGAAGATTCTGGAATTGCGCCGAAAGTACTATCATCGCTCAGATGATTCTGGAACCACAGTGAAGATTCTGGAATTGCGCTGGATATACTATCACTGCTCAGATGATTCTGGAACCACAGTGAAGATTCTGGAATTGCACCGGAAGTACTATCATAGCTCAGATGATTCTAGAACCATAGAGAAGACTCTAGAACCATGACAGGGAGGCTATCATAATCGCTGAGCATTCTAGAATCTAAGGATTCTAGATCGCAGACTATTGCTGAGGATTCTAGAACTACAGAAAATATCCTAGAACCACAACCAGTAGACTGAGGATTCTAGAACCACAGCAAATATTCTAGAACCCTGCCGGGGGTCTGTTACACCACAGAGAATTCTTGAACCACAGTGAAGATTATCATCACTCTCAGATTTCTCAAAGCAAAGTGAAGATTCTAGAGCCATCGTTACTCTGCGGATTCTAGAACCACAGTGAAGATTCTGGAATTACACTGGAATTGGGCTTCTTCTTCTAAGTACTTTTATTAACTCTGAAGATTCTGGAACCACAGTGAAGATTCTAAAGCCTTGGAAAGGAGATTATCATCACTCTCAGCTTTCTCAAACT

Function

NR:

description
PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69489 True 2402 TUCP 0.41 3 2814990 2817550

Neighbor

gene id symbol gene type direction distance location
ccdc96 NA coding downstream 3349 2804495 ~ 2811641 (-)
trnag-ucc_14 NA coding downstream 12940 2801979 ~ 2802050 (-)
trnag-ucc_13 NA coding downstream 23046 2791873 ~ 2791944 (-)
trnar-ucu NA coding downstream 27217 2787702 ~ 2787773 (-)
trnag-ucc_12 NA coding downstream 32642 2782277 ~ 2782348 (-)
LOC113524014 NA coding upstream 17727 2835277 ~ 2841271 (-)
ncapg2 ncapg2 coding upstream 643322 3460872 ~ 3486351 (-)
LOC117597049 ncapg2 coding upstream 708943 3526493 ~ 3534819 (-)
esyt2b esyt2 coding upstream 720765 3538315 ~ 3583012 (-)
LOC113525490 LOC108261092,LOC108261462 coding upstream 887224 3704774 ~ 3710547 (-)
G58648 NA non-coding downstream 196197 2607752 ~ 2618793 (-)
G58650 NA non-coding downstream 197561 2611416 ~ 2617429 (-)
G58645 NA non-coding downstream 204738 2604477 ~ 2610252 (-)
G58628 NA non-coding downstream 247186 2535115 ~ 2567804 (-)
G58598 NA non-coding downstream 412686 2376593 ~ 2402304 (-)
G58703 NA non-coding upstream 13622 2831172 ~ 2831373 (-)
G58704 grpel1 non-coding upstream 15128 2832678 ~ 2834631 (-)
LOC113524008 NA non-coding upstream 27030 2844580 ~ 2853974 (-)
G58809 NA non-coding upstream 212153 3029703 ~ 3084722 (-)
G58832 NA non-coding upstream 255623 3073173 ~ 3073765 (-)
trnag-ucc_9 NA other downstream 88706 2680581 ~ 2726284 (-)
trnag-ucc_8 NA other downstream 98889 2716030 ~ 2716101 (-)
trnag-ucc_7 NA other downstream 104792 2710127 ~ 2710198 (-)
trnag-ucc_6 NA other downstream 108868 2706051 ~ 2706122 (-)
trnag-ucc_5 NA other downstream 134144 2680775 ~ 2680846 (-)
LOC113523993 LOC108261096,LOC108261462,LOC108261092 other upstream 290504 3108054 ~ 3115054 (-)
ptprn2 ptprn2 other upstream 406347 3223897 ~ 3457803 (-)
G59069 NA other upstream 769233 3586783 ~ 3590737 (-)
si:ch73-174h16.4 LOC108268225 other upstream 812438 3629988 ~ 3639208 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other upstream 1077042 3894592 ~ 3920131 (-)

Expression


Co-expression Network