G58704 (grpel1)


Basic Information

Item Value
gene id G58704
gene name grpel1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2832678 ~ 2834631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69499
tCACATGCCAAGAAGTACTCTCTCATTACACGACTCAATCCACTTCTATCACTTTTTATTTGTAAGTTTACAATAAAATGCTatagtattaattaatttttatatatagatatatatatattctttatatatttttaataactgtCTAACGAACCCTCTGCAATGCCACTATGAAATCTCAGGGCTTTTTTCCAGTGGATTAGAAGCTACATTAACTTTAGTAAAGTGAATTTGATTTACTCAGAATTTTCTGTGGACTGCACTGGTTATCTCGTTCAGGTACCAAGAGGACGGATGTCATGAATCTATTATCTGTGATTTTATCAAGGGATTCAGAGCAATATTGTTCCAAATACAGCTTATGTGTAAAGAAGAAAATGTCTCTTAAAGCATCCGGTACTTTCGATTTTCTATAGGCTAAAGACGTgacataacacattcataaccattactttcttttcttttttaagaaaaccATTAACTATTCTTTTTATAAAGTGTGTAATGCTGCTtaataaaagaGCCCTTTTCTCTCCACTTCTATGTGACATAATACTGCATAAAACCTGTAATGTCACCTGACTAAGTTTTGACATAAGCCTTTCATAAAGCATCGAacactgttttataaaagctTAATGTAATGGTTATGAATCTCTTATGTAAGAacccttcaaataaagtgttaccaaaaatCTTATGCATAATTTGCTTAATAAACACTTTCTTAAAATGTCAGTTTCAATCTACTTGATGTTAGTTTCTTAgattgatgtttatttttttcttattttaataaaacgcCTCGTCTTTGTTAAAACGTCCGCATCGGACAGATCCAAATTAACGGCATGACGGAGCAGATCAGGTTTTTCCCCCGATTTATAATGAGGTACAATCAGTGACTAAATTTTCTCCGTACAACACAGTGCATGAAAACGAACAGTATTTGGAAGCTAATTAACATGTAAGATGTAATATAACGCTTTCACTCGAATCAGGTGTGAAACCGGTGACATGTTCAGTGAgcattttctatcattttaCCCGACAGCTGATGGTTAGAGCAGCGAGCGGAGACAAAAGACAGGACAAATATTAGGCATTTAAATATCTGAATATACAAAGTCATGGATGTACATTACTACAGCTGATTTCACCATCATTTTCAtggaccctttttttttttttttttccacttcttaACAGCATCGTCTGAAATGCATTCACACTGGCTTGTGTTTTCATCACATCTTAATACACACATGGCATGTGTTGGACACGCCCCTTTTCTCAGACGTACATTTATAATCCAGAAACAGACACAATGAATGTTACACGGATGAACAGAAACAGGTTCGCTTCACTCTCACCATCTTCCACctccattattattatcattattattattattattatataaactgTGATATAATTCAGAGGAATTCACATCAGATCAGTCCGCTATCGTCCGTACGATTCGGTCAAGTTCAGGCAAACCGGATCAAACTGGAAAGCAGAACCAGACTAAACCGGGTTTTTACGGAGCTTTGACCACGCCCACAAGCGCAGGTCGCAAGGTGCGGCCGTGCAGCTTGTAGCCCACTTTGGTAACCATGGCGACGGTGCCAGGCTCCTGGCCCTCGAAGGGTATGTGGAAGAGCGCTTCGTGCTCGTACGGGTCGAACTTGAGCCCGGCCGGATCCAGTTTCACCAGGCCGTGTTTGGTGAAAACCTTCTGGATCTGCACCTGCGTCATCACCAGCCCGTCGTACAGGTTCTTCAGGTGAGGGTTCTGCGAGGTCACTTCCTCCTTCGGGACGCTCTGCGTCGCCTTCTCCAAGATGTCCGCCACCTCAAGCAGGTCTTTACAGAAACCCTG

Function

symbol description
grpel1 Predicted to enable adenyl-nucleotide exchange factor activity and unfolded protein binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein folding. Predicted to be located in mitochondrion. Predicted to be part of PAM complex, Tim23 associated import motor. Orthologous to human GRPEL1 (GrpE like 1, mitochondrial).

NR:

description
PREDICTED: grpE protein homolog 1, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69499 True 1882 lncRNA 0.39 3 2832678 2834631

Neighbor

gene id symbol gene type direction distance location
ccdc96 NA coding downstream 21037 2804495 ~ 2811641 (-)
trnag-ucc_14 NA coding downstream 30628 2801979 ~ 2802050 (-)
trnag-ucc_13 NA coding downstream 40734 2791873 ~ 2791944 (-)
trnar-ucu NA coding downstream 44905 2787702 ~ 2787773 (-)
trnag-ucc_12 NA coding downstream 50330 2782277 ~ 2782348 (-)
LOC113524014 NA coding upstream 646 2835277 ~ 2841271 (-)
ncapg2 ncapg2 coding upstream 626241 3460872 ~ 3486351 (-)
LOC117597049 ncapg2 coding upstream 691862 3526493 ~ 3534819 (-)
esyt2b esyt2 coding upstream 703684 3538315 ~ 3583012 (-)
LOC113525490 LOC108261092,LOC108261462 coding upstream 870143 3704774 ~ 3710547 (-)
G58703 NA non-coding downstream 1305 2831172 ~ 2831373 (-)
G58594 NA non-coding downstream 5788 2348719 ~ 2826890 (-)
G58648 NA non-coding downstream 213885 2607752 ~ 2618793 (-)
G58650 NA non-coding downstream 215249 2611416 ~ 2617429 (-)
G58645 NA non-coding downstream 222426 2604477 ~ 2610252 (-)
LOC113524008 NA non-coding upstream 9949 2844580 ~ 2853974 (-)
G58809 NA non-coding upstream 195072 3029703 ~ 3084722 (-)
G58832 NA non-coding upstream 238542 3073173 ~ 3073765 (-)
G58933 NA non-coding upstream 314856 3149487 ~ 3149936 (-)
G58960 NA non-coding upstream 353693 3188324 ~ 3190127 (-)
G58696 NA other downstream 15128 2814990 ~ 2817550 (-)
trnag-ucc_8 NA other downstream 116577 2716030 ~ 2716101 (-)
trnag-ucc_7 NA other downstream 122480 2710127 ~ 2710198 (-)
trnag-ucc_6 NA other downstream 126556 2706051 ~ 2706122 (-)
trnag-ucc_5 NA other downstream 151832 2680775 ~ 2680846 (-)
LOC113523993 LOC108261096,LOC108261462,LOC108261092 other upstream 273423 3108054 ~ 3115054 (-)
ptprn2 ptprn2 other upstream 389266 3223897 ~ 3457803 (-)
G59069 NA other upstream 752152 3586783 ~ 3590737 (-)
si:ch73-174h16.4 LOC108268225 other upstream 795357 3629988 ~ 3639208 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other upstream 1059961 3894592 ~ 3920131 (-)

Expression


Co-expression Network