LOC113523993 (LOC108261096,LOC108261462,LOC108261092)


Basic Information

Item Value
gene id LOC113523993
gene name LOC108261096,LOC108261462,LOC108261092
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3108054 ~ 3115054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69653
GGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCTACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACACTGTTTATATCGCAACACAAATTCCTCAAACCTCCCAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCAAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGCTTCAGGTCCATCACGTGTAGAAGCTCCATTCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAG
>XM_034303551.1
ATGTCATGGCTCTTCCTCCCTGCTTCACTGAGTCAGTCACTTATTCTGGGCCATGCCCGCATTGGGACCAGGGTATCACAACGGAGTCCTCAAGCTGTGGTGTTGATAAAGCCTGATAAACATGTGTTCATTGGAGAGACTGTTACTCTCAGATGTGACATACAGGGAGGAGGAGACACTGAGTGGACATACAGCTGGTATAAGAATAATAACTCACTCTACCTTGAAATATTCTACGGATTTGACACAGATAGCACAATGCAGCAGTTGAGTATCTGGTCTGTTAGAGACTCTGACGGTGGTGACTACACCTGCAGAGGACAGAGCAGTGactctcagagctcagagatcagtgatgctgttacactgactgtatcagAGAGCCCACGGCCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGGCTGGAAGTTCAGCTGGCACACAGCTGTTCCTTACAGAATAATAAGAGACAGTCATGGTGATATCGTTTATGGAGGCTTCTACACTCTCAGTCCTGCTGCTCTTAATCACACAGGAGTTTATGTGTGTGAATCACAGAGAGGAGAATCAACCCGTTACAGAAGTTACAGCAACCAACAGCCACTATGGATCACTGGTGAATCTCCTCCAGGCTCTCTGATCATCAATCccagcagaactcaacactttaCTAAagcctctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTAGGGCGATACACACATAGAGGGGCAGAGTCAGATTGTTCATGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCTACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACACTGTTTATATCGCAACACAAATTCCTCAAACCTCCCAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCAAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGAAGCTCCATTCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCGCACGGATGAAGACAGAATCGAGAATGCAGTCATAGAGGAGTGA

Function

NR:

description
PREDICTED: high affinity immunoglobulin gamma Fc receptor I-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69653 False 495 lncRNA 0.47 3 3108612 3109850
XM_034303551.1 True 1344 mRNA 0.47 8 3108054 3115054

Neighbor

gene id symbol gene type direction distance location
LOC113524014 NA coding downstream 266783 2835277 ~ 2841271 (-)
ccdc96 NA coding downstream 296413 2804495 ~ 2811641 (-)
trnag-ucc_14 NA coding downstream 306004 2801979 ~ 2802050 (-)
trnag-ucc_13 NA coding downstream 316110 2791873 ~ 2791944 (-)
trnar-ucu NA coding downstream 320281 2787702 ~ 2787773 (-)
ncapg2 ncapg2 coding upstream 345818 3460872 ~ 3486351 (-)
LOC117597049 ncapg2 coding upstream 411439 3526493 ~ 3534819 (-)
esyt2b esyt2 coding upstream 423261 3538315 ~ 3583012 (-)
LOC113525490 LOC108261092,LOC108261462 coding upstream 589720 3704774 ~ 3710547 (-)
LOC117597100 NA coding upstream 595517 3710571 ~ 3724565 (-)
G58809 NA non-coding downstream 23332 3029703 ~ 3084722 (-)
G58832 NA non-coding downstream 34289 3073173 ~ 3073765 (-)
LOC113524008 NA non-coding downstream 254080 2844580 ~ 2853974 (-)
G58704 grpel1 non-coding downstream 273423 2832678 ~ 2834631 (-)
G58703 NA non-coding downstream 276681 2831172 ~ 2831373 (-)
G58933 NA non-coding upstream 34433 3149487 ~ 3149936 (-)
G58960 NA non-coding upstream 73270 3188324 ~ 3190127 (-)
G58965 NA non-coding upstream 114396 3229450 ~ 3230320 (-)
G58969 NA non-coding upstream 133373 3248427 ~ 3280575 (-)
G59075 NA non-coding upstream 484932 3599986 ~ 3600201 (-)
G58696 NA other downstream 290504 2814990 ~ 2817550 (-)
trnag-ucc_9 NA other downstream 381770 2680581 ~ 2726284 (-)
trnag-ucc_8 NA other downstream 391953 2716030 ~ 2716101 (-)
trnag-ucc_7 NA other downstream 397856 2710127 ~ 2710198 (-)
trnag-ucc_6 NA other downstream 401932 2706051 ~ 2706122 (-)
ptprn2 ptprn2 other upstream 108843 3223897 ~ 3457803 (-)
G59069 NA other upstream 471729 3586783 ~ 3590737 (-)
si:ch73-174h16.4 LOC108268225 other upstream 514934 3629988 ~ 3639208 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other upstream 779538 3894592 ~ 3920131 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other upstream 1056145 4171199 ~ 4210106 (-)

Expression


Co-expression Network