si:ch73-174h16.4 (LOC108268225)


Basic Information

Item Value
gene id si:ch73-174h16.4
gene name LOC108268225
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3629988 ~ 3639208 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69907
GCACTGAACCCGCTCTCCAGGGCGGCGCTGGTGGAGTTAGCGCGGGCCGCGGCAGGCATGGACTCCCTGAGGCTCCTCCTCTACCCTAACCCGCTGGAGGAGTACGAGCCCGGGCTGCCCCCCCTGCCCTCCAGCGCACAGCTCCTCGACTGGCCTCTTATCGAAGAGTCGGACGTCAAAGAGCTCACGCTGATGCAGCTGGACGAGGTTTTGAGAGCCAAAGGGCGCATGCGGGACCTCTTAATGACCTCTGACCTGCTGAAATATAGCACTGACCTAGCAATGGATGATTAGCGTCATAGGAAAAAGGATAGTTTAGCAACAAAAAACAATTTTCGTAACAATTTTGTTTCGACCTGGAGTTACGaggctaatatagctaacaaGCAGTggaagcttatagccaccaTTTTAGCATCAAGATTCAGGCactacatgcacacacttcattgtgaagtatttttgtccatttttatatacataccaTGTTAGAGACTGTATCTCACGGCATAACTGCAAAATTGGTAGCTATTTGCTGCgacattagcctcgtagctccacTGCAAAACGCTAGCAACAAACGTGCCTTGTTTGATTGGCTACATTTGATTATGTATAATTTTTAGCCACATTATTCCTTTATCTCCGTATCTCCCAGAAGTCTTGTGCAGGTTTCGGTGGGTCTCCTGCTCTGACACACCAGGTTCAGTCTCTGACGCCATGTTGACACGCAGAGGATCTTCTCGTCCCGGGAAACACCACGTTGATGAAGTTTTAATACTTATTACTGAGCAGAAATTGCACTTCATTGAGAAACACGTGTTAAAACCAACCGAGGATGAACTTTTCCCATCATCCAACACGAGAAGTTCCTGAAGTCACGATGATGCGAAACCTCTCAGCATTAAGAGCGTGTTACTCTTTATCCTGctgagataaacacacagccaACACGGACAAACACATCAACTTCTGTTCAGTTACGTTTTCCAGTTTGGCTCTAACATCAGAAGGATTAGGATCAGCGATGAGGCTACGTCACACACGCACGGACGGATGGACGGATTGATGGATTTGCTGTATTTACTGCACTCAGTACAATTTCATCGACTAACTGTGATCTTTTTAGCTAAATCGAACAGATCTTTTACTTAACAGATCTCTCTTCATGTTTGTTAAACGTGCCAAagaaatgatttcaatacaATTTCAATACAATCATGTTCtactaaaaccttttttttttttcatcctgcgTGTGACATCATGACTGGATCTTAACTTCACC
>XM_034303798.1
GCGGCGgtgttttgtttattagagGTGGCGGAAATGAAGCTCGTttgatggaggtggtgtaaaTTAACCAGTTTAAACTCATGTAATGCTGAAGCCTGAAGTTTGATCTTGTTAAATAGTGTTTTAGTGCAGTGCTGCAGTCACTCCTGTTAGATGATGCTGTGGCTTTGTGGATATAAACATCATGCACATGGTTATTTATAGTCATTTATTCACGAAGAGGAGCTTCAGTGCCACAACACTAAGAGATGGTCCTGTCGTTGGTGTACCTGTGTGCGCGGGAGGTGGTCAGTGATCACGGGTTGTCGGCTGCGTGGCTGAGCTGTGTGCCGCGCGAGCTCTACAGGCCGCTGCTGGACGCCGCGTTCGCTCACAGTCGCCCGCTGGCCATCGGAGAGCTGGTGCAGCGCTGGCCTGAGCGGACCCTCAGCATCGGGGGACGGAAAACACGTGACCATGATCCACCAAACCGCCTGTGTGTCCAGGCCCTGCTGCTCGCCGTGGTCAGGGGCTTGACGGATAAGAgATGTCGTCTGCAGGTGCTGGATCTTTGCGGGCTGCAGTGCGAGGACGGCCGCTCGGAGGACGCGATGGGCGGCTGGTCCCTCACCGTGGCGTTGTGCTCCACGCTGCTGCAGGCGAGAAACGTGGCCGCTGCCTCCAGGGGGCGCAGACAAGACGAccgagagaagaaaaagagagggctGGAGACGGAGAGAGAGCGGGACGGTGCGGTGAAACGAGACCGAGCCGGACTGAAgaaggaggaaggggagaagATGGATTGCGGTGATAACGCAGCGCCTGAACGAGGGATTTCGACATCAGAAGAGGAGAAGGTGAAGGGCgtgaggaggaggatggagcTGCAGAGGAGAATCGGAGCTCAGCCGCAGCAGGTTCCCAGCAGAGAGGACGTTCTGGTGGACATCAGGGCCGATCTGTTTGTGAACGCGCGATCCTGGGAGCGTGTGCGCGGGGCGCTAAGCCTCTCCGGCCCCCTGCAGCTTCACTGCCGCTTCCTGCGTGTGGAGGAGCTGCCCGCGTCCTCCATCGCCTCCCTGCTGCACCTGCTGCCCCAGGAGGAGCTCCTCGGTCTGGATGTGCGCTACTCCAGCCTGGGCGTGTCAGGGTTAGCGCTGCTGTTGCCCCAGTTAGCACCTTTTCCTCGACTCAGCTCGCTCCGGCTGCACTACTGCAACCTGGATGTGCAGCGCGCTCGTCCCGGCCAGCAGGAGGCGCTGCAGGACGTGTCTCGAGGGCTTGGAGAGCTGAAGCGGCTGCGCAGGCTGAGTCTCACTGCTCTGCGTCTGCCGGGACACCTGCGCCTGCTGCTCAGCTCTCTGTCGGAGCCACTGGAGGCGCTGGAGCTGCCATACCTCAGCCTGACGTCCGGGGACGTGGCGTACCTCTCGCGCAGCCCTCACGCGTCCTCCCTCGCCGAGCTGGACCTGAGTGAGAACAGGCTGGACGAGTCGTCTCTGCACTCCCTGCGCCATCTCCTCGCCCGGGCCGAGCGCTGCCTGACGCGCCTGTCTCTGTGCGGCTGCGGACTCTCGGACGGCCCCCTGGGGGCGCTGCTGCCCGCGCTGGGGCAATGCCACGCCCTCCGCAGCCTCCGATTGGCACTGAACCCGCTCTCCAGGGCGGCGCTGGTGGAGTTAGCGCGGGCCGCGGCAGGCATGGACTCCCTGAGGCTCCTCCTCTACCCTAACCCGCTGGAGGAGTACGAGCCCGGGCTGCCCCCCCTGCCCTCCAGCGCACAGCTCCTCGACTGGCCTCTTATCGAAGAGTCGGACGTCAAAGAGCTCACGCTGATGCAGCTGGACGAGGTTTTGAGAGCCAAAGGGCGCATGCGGGACCTCTTAATGACCTCTGACCTGCTGAAATATAGCACTGACCTAGCAATGGATGATTAGCGTCATAGGAAAAAGGATAGTTTAGCAACAAAAAACAATTTTCGTAACAATTTTGTTTCGACCTGGAGTTACGaggctaatatagctaacaaGCAGTggaagcttatagccaccaTTTTAGCATCAAGATTCAGGCactacatgcacacacttcattgtgaagtatttttgtccatttttatatacataccaTGTTAGAGACTGTATCTCACGGCATAACTGCAAAATTGGTAGCTATTTGCTGCgacattagcctcgtagctccacTGCAAAACGCTAGCAACAAACGTGCCTTGTTTGATTGGCTACATTTGATTATGTATAATTTTTAGCCACATTATTCCTTTATCTCCGTATCTCCCAGAAGTCTTGTGCAGGTTTCGGTGGGTCTCCTGCTCTGACACACCAGGTTCAGTCTCTGACGCCATGTTGACACGCAGAGGATCTTCTCGTCCCGGGAAACACCACGTTGATGAAGTTTTAATACTTATTACTGAGCAGAAATTGCACTTCATTGAGAAACACGTGTTAAAACCAACCGAGGATGAACTTTTCCCATCATCCAACACGAGAAGTTCCTGAAGTCACGATGATGCGAAACCTCTCAGCATTAAGAGCGTGTTACTCTTTATCCTGctgagataaacacacagccaACACGGACAAACACATCAACTTCTGTTCAGTTACGTTTTCCAGGTTTGTAGAAGAAGATTGAGTTGAGATGatggattgatttttttttttattactggtGTTCAATATTTGAAAACATTATCATATAAATTTCTTTTGATACTTTCTTCCTacatgtttctctgtgtgtgtcacttccagtgaaggaggcgtggcctctgtgtatgtcagtctcagtgaaggaggcgtggcctgtgtgtgtcacttccagtgaa
>XR_004578021.1
GCGGCGgtgttttgtttattagagGTGGCGGAAATGAAGCTCGTttgatggaggtggtgtaaaTTAACCAGTTTAAACTCATGTAATGCTGAAGCCTGAAGTTTGATCTTGTTAAATAGTGTTTTAGTGCAGTGCTGCAGTCACTCCTGTTAGATGATGCTGTGGCTTTGTGGATATAAACATCATGCACATGGTTATTTATAGTCATTTATTCACGAAGAGGAGCTTCAGTGCCACAACACTAAGAGATGGTCCTGTCGTTGGTGTACCTGTGTGCGCGGGAGGTGGTCAGTGATCACGGGTTGTCGGCTGCGTGGCTGAGCTGTGTGCCGCGCGAGCTCTACAGGCCGCTGCTGGACGCCGCGTTCGCTCACAGTCGCCCGCTGGCCATCGGAGAGCTGGTGCAGCGCTGGCCTGAGCGGACCCTCAGCATCGGGGGACGGAAAACACGTGACCATGATCCACCAAACCGCCTGTGTGTCCAGGCCCTGCTGCTCGCCGTGGTCAGGGGCTTGACGGATAAGAgATGTCGTCTGCAGGTGCTGGATCTTTGCGGGCTGCAGTGCGAGGACGGCCGCTCGGAGGACGCGATGGGCGGCTGGTCCCTCACCGTGGCGTTGTGCTCCACGCTGCTGCAGGCGAGAAACGTGGCCGCTGCCTCCAGGGGGCGCAGACAAGACGAccgagagaagaaaaagagagggctGGAGACGGAGAGAGAGCGGGACGGTGCGGTGAAACGAGACCGAGCCGGACTGAAgaaggaggaaggggagaagATGGATTGCGGTGATAACGCAGCGCCTGAACGAGGGATTTCGACATCAGAAGAGGAGAAGGTGAAGGGCgtgaggaggaggatggagcTGCAGAGGAGAATCGGAGCTCAGCCGCAGCAGGTTCCCAGCAGAGAGGACGTTCTGGTGGACATCAGGGCCGATCTGTTTGTGAACGCGCGATCCTGGGAGCGTGTGCGCGGGGCGCTAAGCCTCTCCGGCCCCCTGCAGCTTCACTGCCGCTTCCTGCGTGTGGAGGAGCTGCCCGCGTCCTCCATCGCCTCCCTGCTGCACCTGCTGCCCCAGGAGGAGCTCCTCGGTCTGGATGTGCGCTACTCCAGCCTGGGCGTGTCAGGGTTAGCGCTGCTGTTGCCCCAGTTAGCACCTTTTCCTCGACTCAGCTCGCTCCGGCTGCACTACTGCAACCTGGATGTGCAGCGCGCTCGTCCCGGCCAGCAGGAGGCGCTGCAGGACGTGTCTCGAGGGCTTGGAGAGCTGAAGCGGCTGCGCAGGCTGAGTCTCACTGCTCTGCGTCTGCCGGGACACCTGCGCCTGCTGCTCAGCTCTCTGTCGGAGCCACTGGAGGCGCTGGAGCTGCCATACCTCAGCCTGACGTCCGGGGACGTGGCGTACCTCTCGCGCAGCCCTCACGCGTCCTCCCTCGCCGAGCTGGACCTGAGTGAGAACAGGCTGGACGAGTCGTCTCTGCACTCCCTGCGCCATCTCCTCGCCCGGGCCGAGCGCTGCCTGACGCGCCTGTCTCTGTGCGGCTGCGGACTCTCGGACGGCCCCCTGGGGGCGCTGCTGCCCGCGCTGGGGCAATGCCACGCCCTCCGCAGCCTCCGATTGGCACTGAACCCGCTCTCCAGGGCGGCGCTGGTGGAGTTAGCGCGGGCCGCGGCAGGCATGGACTCCCTGAGGCTCCTCCTCTACCCTAACCCGCTGGAGGAGTACGAGCCCGGGCTGCCCCCCCTGCCCTCCAGCGCACAGCTCCTCGACTGGCCTCTTATCGAAGAGTCGGACGTCAAAGAGCTCACGCTGATGCAGCTGGACGAGGTTTTGAGAGCCAAAGGGCGCATGCGGGACCTCTTAATGACCTCTGACCTGCTGAAATATAGCACTGACCTAGCAATGGATGATTAGCGTCATAGGAAAAAGGATAGTTTAGCAACAAAAAACAATTTTCGTAACAATTTTGTTTCGACCTGGAGTTACGaggctaatatagctaacaaGCAGTggaagcttatagccaccaTTTTAGCATCAAGATTCAGGCactacatgcacacacttcattgtgaagtatttttgtccatttttatatacataccaTGTTAGAGACTGTATCTCACGGCATAACTGCAAAATTGGTAGCTATTTGCTGCgacattagcctcgtagctccacTGCAAAACGCTAGCAACAAACGTGCCTTGTTTGATTGGCTACATTTGATTATGTATAATTTTTAGCCACATTATTCCTTTATCTCCGTATCTCCCAGAAGTCTTGTGCAGGTTTCGGTGGGTCTCCTGCTCTGACACACCAGGTTCAGTCTCTGACGCCATGTTGACACGCAGAGGATCTTCTCGTCCCGGGAAACACCACGTTGATGAAGTTTTAATACTTATTACTGAGCAGAAATTGCACTTCATTGAGAAACACGTGTTAAAACCAACCGAGGATGAACTTTTCCCATCATCCAACACGAGAAGTTCCTGAAGTCACGATGATGCGAAACCTCTCAGCATTAAGAGCGTGTTACTCTTTATCCTGctgagataaacacacagccaACACGGACAAACACATCAACTTCTGTTCAGTTACGTTTTCCAGTTTGGCTCTAACATCAGAAGGATTAGGATCAGCGATGAGGCTACGTCACACACGCACGGACGGATGGACGGATTGATGGATTTGCTGTATTTACTGCACTCAGTACAATTTCATCGACTAACTGTGATCTTTTTAGCTAAATCGAACAGATCTTTTACTTAACAGATCTCTCTTCATGTTTGTTAAACGTGCCAAagaaatgatttcaatacaATTTCAATACAATCATGTTCtactaaaaccttttttttttttcatcctgcgTGTGACATCATGACTGGATCTTAACTTCACCATAGCATACTCTTATCCTGTATTTCTGCTTTtcaataaatacaaaccaaaGCATTTCTTACAAAAACGTAA

Function

NR:

description
leucine-rich repeat-containing protein 14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69907 False 1288 TUCP 0.45 2 3630059 3633233
XM_034303798.1 False 2830 mRNA 0.55 4 3632029 3639208
XR_004578021.1 True 2984 misc_RNA 0.54 5 3629988 3639208

Neighbor

gene id symbol gene type direction distance location
esyt2b esyt2 coding downstream 46976 3538315 ~ 3583012 (-)
LOC117597049 ncapg2 coding downstream 95169 3526493 ~ 3534819 (-)
ncapg2 ncapg2 coding downstream 143637 3460872 ~ 3486351 (-)
LOC113524014 NA coding downstream 788717 2835277 ~ 2841271 (-)
ccdc96 NA coding downstream 818347 2804495 ~ 2811641 (-)
LOC113525490 LOC108261092,LOC108261462 coding upstream 65566 3704774 ~ 3710547 (-)
LOC117597100 NA coding upstream 71363 3710571 ~ 3724565 (-)
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding upstream 629960 4269168 ~ 4284392 (-)
maf1b maf1,LOC108268258 coding upstream 875395 4514603 ~ 4527107 (-)
LOC113547216 NA coding upstream 965964 4605172 ~ 4609562 (-)
G59075 NA non-coding downstream 29787 3599986 ~ 3600201 (-)
G58969 NA non-coding downstream 349413 3248427 ~ 3280575 (-)
G58965 NA non-coding downstream 399668 3229450 ~ 3230320 (-)
G58960 NA non-coding downstream 439861 3188324 ~ 3190127 (-)
G58933 NA non-coding downstream 480052 3149487 ~ 3149936 (-)
G59223 NA non-coding upstream 263730 3902938 ~ 4281899 (-)
LOC113547221 NA non-coding upstream 275375 3914583 ~ 3957093 (-)
LOC117597096 NA non-coding upstream 302331 3941539 ~ 3943736 (-)
LOC117597094 NA non-coding upstream 507608 4146816 ~ 4155085 (-)
G59249 LOC108268217,LOC108261462 non-coding upstream 558120 4197328 ~ 4198139 (-)
G59069 NA other downstream 39251 3586783 ~ 3590737 (-)
ptprn2 ptprn2 other downstream 172185 3223897 ~ 3457803 (-)
LOC113523993 LOC108261096,LOC108261462,LOC108261092 other downstream 514934 3108054 ~ 3115054 (-)
G58696 NA other downstream 812438 2814990 ~ 2817550 (-)
trnag-ucc_8 NA other downstream 913887 2716030 ~ 2716101 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other upstream 255384 3894592 ~ 3920131 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other upstream 531991 4171199 ~ 4210106 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other upstream 559005 4198213 ~ 4256284 (-)
LOC117597059 LOC108268206,LOC108268239 other upstream 921580 4560788 ~ 4571827 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other upstream 1002812 4642020 ~ 4647880 (-)

Expression


Co-expression Network