LOC113547237 (LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092)


Basic Information

Item Value
gene id LOC113547237
gene name LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3728456 ~ 3736323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69928
CTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGATGGCttaactcaaataaaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccaGCCGTTCACACACAGTACACCAATCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttgCTCatgactctctctcactgagctgtGAGGACCAGAGAAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggaaTGTTAGATTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCTACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAG
>XM_034303812.1
GACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGATGGCttaactcaaataaaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccaGCCGTTCACACACAGTACACCAATCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttgCTCatgactctctctcactgagctgtGAGGACCAGAGAAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggaaTGTTAGATTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCTACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAGCACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGTTCTCAGTCAGAGtCTCAGGTTCTAGATCCGGTGGTGTAACAGTAGGAGTGGCTGTGGGTTTGGGAATTTTGTTCATCGCTTTACTGATCTTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagaaaagcagaagaaaatcAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTATCAGTCAGGACACACACCACTTCAGGCTGAAAGTGAACATATTTATGGTACTGTGGATCAGGCAGATACGAGTGGAACAGGTGCTGATGCTGAACCCGGTGTTAGTGATGTGATTTATGCTAATCTTGAACTAAAaccaatgaaaaatgaaaacagaataaaagtgagccgtgtgtctgtgtccactgATGAAGCTACAGTTCTCAAACAGATCGCTGGAAAACTGTGAATTGTGAttgtcttctgtttttcctaAAATGCTCAGAGTAGTAAAGTCTGCTCATCCCCTTCCTGTACCCAAGGAACatcacttattattttttaatgctttttactGCTTTTCCTTTTCTACTTATTCTGTACACTTATTATtaagtattgggacacctgaccattatacCAACAGGGATTTTAATGACATCGCATtctaaatacattaatatagaGTTGGTCCCCCCTTTGCAGCTCTAAcagcttccactcttctgggcaggctttccacaagatttgCGTGTTTCTGtgggaatttttgcccattcatcCAGTAGAGCATttgtgagatcaggcactgctTTTGGAccagaaggcctggctcgcaatgtattccagttcatcccaaaggtgttgattGGCATTGTGGTCAGGGTTCtttgcaggccagtcaagttcttccacaccaaactcatccaatcatgtctttatggaccttgctttgtgcactggggcaCAGTCACACTGGAATAGAAAAGGGCTTTcctcaaactgttcccacaaagttggaagcatagcattgtccaaaatgtcttgttatgctgaagcattaacatttcccttcactggaagtaaagGGCCTAGCCcaaccctgaaaaacagccccataCCATTATCCCTCCTGCACCAAACTTTACAGTTGGCACAATGTAGTCAGGCAGGTAATGTTCTCCTGGCATccaccaaacccagactcgcccataagacaaacagagaagcgtgattcttCACTCCACAGAGCATATTTCCACTATACATATTACTATTACTCATATGCTAATTCCATTGAACatacattaatacaaataatttaatatacataTGGTTCattatacttatttttattttactcataTACTTGCACTTCAGTGCTTTTGGTTGTTTTTCGGTTGGATACGAACACTTGGTATCTGGTACTGCACACaccaaagaagaagaaacatgaGTGAAGTATGTAAGTCTGTCACTGGTTTCTTACACAAAGTGAGTTATTCTTGTTGATGTACAAATTTCActgatgaaataatgaattaacATGAAAGTACAGTTGGCTGGGgtgaacatttatatttttggttCTGCAACGTGCTGTCCTGGATCATTGCTGCCGTCATCTGATCTgttgatccacacacacacacacacacacacacacacacacacacacaccttttaaataatgttgtttttgaaaattttctctttataatttacatttttctaaacattttctATGCCTTTACACATGACCTGATGCTTTGGTAGTCATCTCACCACATTCAATAGAGGAGGCTTACGATAGAGAACTCGTTTTGTACTTCAGCAATGTTtagataaaatatgaataaagatGTACAACTCTGAATGAAATGTAGGTTATCCTTGccatatatacaaataatattttccttaaaacatatatattttatatcttttcattctgtttgtTGTTAATTTTAGACAGGTTAAGCAGTGATGTTGATGGTAGTCAAAAATCAGCAGCTTTCCACAGGTAGTCTACATTTAAAGCCAAGTTATTAGTAAATATGTTTGTGTGGAATTACAGTGTACAATTGGGTGTTTTATAAATGAACAGTGTCAtaaacagagctgtggtgtTTTTTCTACTGTGATAAAAGCAGTAAGTGTCTTCTGAGCTGCAGTCACTTACTGCTTTTATCACTGGAGAATCAACACTACAGCTCTGTTTATGGCCCTGTTCACTGTTCAATTCCATATTTGGACAAAATCTATTCATGCATACCAAATGTACATCTGAACCAACATGATAGATGACAAGGACAAGGTCCACTGTCTTCCAAAGTTTAGCTCCAACCctaatcaaacacacctgaacaaacTAACCAAGGTCTTCAGGATTACTAGAAAATTACAGGCAGGTAAGTTTGGaggttggagctaaactctgcagattTGAAGAACCCTGTGATAGTTTCATTGTTATCACTATAGACTTCATTGAGAAGCATAAGCTATTGTATGTCAATC
>XM_034303813.1
GACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGATGGCttaactcaaataaaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccaGCCGTTCACACACAGTACACCAATCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttgCTCatgactctctctcactgagctgtGAGGACCAGAGAAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggaaTGTTAGATTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCTACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAGCACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGTTCTCAGTCAGAGtCTCAGGTTCTAGATCCGGTGGTGTAACAGTAGGAGTGGCTGTGGGTTTGGGAATTTTGTTCATCGCTTTACTGATCTTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagaaaagcagaagaaaatcAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTATCAGTCAGGACACACACCACTTCAGGCTGGTGCTGATGCTGAACCCGGTGTTAGTGATGTGATTTATGCTAATCTTGAACTAAAaccaatgaaaaatgaaaacagaataaaagtgagccgtgtgtctgtgtccactgATGAAGCTACAGTTCTCAAACAGATCGCTGGAAAACTGTGAATTGTGAttgtcttctgtttttcctaAAATGCTCAGAGTAGTAAAGTCTGCTCATCCCCTTCCTGTACCCAAGGAACatcacttattattttttaatgctttttactGCTTTTCCTTTTCTACTTATTCTGTACACTTATTATtaagtattgggacacctgaccattatacCAACAGGGATTTTAATGACATCGCATtctaaatacattaatatagaGTTGGTCCCCCCTTTGCAGCTCTAAcagcttccactcttctgggcaggctttccacaagatttgCGTGTTTCTGtgggaatttttgcccattcatcCAGTAGAGCATttgtgagatcaggcactgctTTTGGAccagaaggcctggctcgcaatgtattccagttcatcccaaaggtgttgattGGCATTGTGGTCAGGGTTCtttgcaggccagtcaagttcttccacaccaaactcatccaatcatgtctttatggaccttgctttgtgcactggggcaCAGTCACACTGGAATAGAAAAGGGCTTTcctcaaactgttcccacaaagttggaagcatagcattgtccaaaatgtcttgttatgctgaagcattaacatttcccttcactggaagtaaagGGCCTAGCCcaaccctgaaaaacagccccataCCATTATCCCTCCTGCACCAAACTTTACAGTTGGCACAATGTAGTCAGGCAGGTAATGTTCTCCTGGCATccaccaaacccagactcgcccataagacaaacagagaagcgtgattcttCACTCCACAGAGCATATTTCCACTATACATATTACTATTACTCATATGCTAATTCCATTGAACatacattaatacaaataatttaatatacataTGGTTCattatacttatttttattttactcataTACTTGCACTTCAGTGCTTTTGGTTGTTTTTCGGTTGGATACGAACACTTGGTATCTGGTACTGCACACaccaaagaagaagaaacatgaGTGAAGTATGTAAGTCTGTCACTGGTTTCTTACACAAAGTGAGTTATTCTTGTTGATGTACAAATTTCActgatgaaataatgaattaacATGAAAGTACAGTTGGCTGGGgtgaacatttatatttttggttCTGCAACGTGCTGTCCTGGATCATTGCTGCCGTCATCTGATCTgttgatccacacacacacacacacacacacacacacacacacacacaccttttaaataatgttgtttttgaaaattttctctttataatttacatttttctaaacattttctATGCCTTTACACATGACCTGATGCTTTGGTAGTCATCTCACCACATTCAATAGAGGAGGCTTACGATAGAGAACTCGTTTTGTACTTCAGCAATGTTtagataaaatatgaataaagatGTACAACTCTGAATGAAATGTAGGTTATCCTTGccatatatacaaataatattttccttaaaacatatatattttatatcttttcattctgtttgtTGTTAATTTTAGACAGGTTAAGCAGTGATGTTGATGGTAGTCAAAAATCAGCAGCTTTCCACAGGTAGTCTACATTTAAAGCCAAGTTATTAGTAAATATGTTTGTGTGGAATTACAGTGTACAATTGGGTGTTTTATAAATGAACAGTGTCAtaaacagagctgtggtgtTTTTTCTACTGTGATAAAAGCAGTAAGTGTCTTCTGAGCTGCAGTCACTTACTGCTTTTATCACTGGAGAATCAACACTACAGCTCTGTTTATGGCCCTGTTCACTGTTCAATTCCATATTTGGACAAAATCTATTCATGCATACCAAATGTACATCTGAACCAACATGATAGATGACAAGGACAAGGTCCACTGTCTTCCAAAGTTTAGCTCCAACCctaatcaaacacacctgaacaaacTAACCAAGGTCTTCAGGATTACTAGAAAATTACAGGCAGGTAAGTTTGGaggttggagctaaactctgcagattTGAAGAACCCTGTGATAGTTTCATTGTTATCACTATAGACTTCATTGAGAAGCATAAGCTATTGTATGTCAATC

Function

NR:

description
PREDICTED: sialoadhesin-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69928 False 524 TUCP 0.47 2 3728456 3730348
XM_034303812.1 True 3258 mRNA 0.41 8 3728462 3736323
XM_034303813.1 False 3207 mRNA 0.41 7 3728462 3736323

Neighbor

gene id symbol gene type direction distance location
wdr60 NA coding upstream 129942 3586625 ~ 3598514 (+)
LOC117597046 NA coding upstream 207808 3501809 ~ 3520648 (+)
dnajb6b dnajb6 coding upstream 539989 3149618 ~ 3188467 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding upstream 579260 3139120 ~ 3149196 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding upstream 589597 3132940 ~ 3138859 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding downstream 236878 3973201 ~ 3980620 (+)
LOC117597091 LOC108261462,LOC108261092 coding downstream 252430 3988753 ~ 4042869 (+)
LOC117597099 NA coding downstream 268830 4005153 ~ 4006341 (+)
LOC117597051 LOC108261462,LOC108261092 coding downstream 354474 4090797 ~ 4117049 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 579455 4315778 ~ 4334167 (+)
LOC117597098 NA non-coding upstream 69321 3658157 ~ 3659135 (+)
G59085 NA non-coding upstream 72533 3655711 ~ 3655923 (+)
G59030 NA non-coding upstream 126389 3601563 ~ 3602067 (+)
G58999 NA non-coding upstream 189698 3536905 ~ 3538758 (+)
G58864 ptprn2 non-coding upstream 460125 3263703 ~ 3268331 (+)
G59104 NA non-coding downstream 31515 3767838 ~ 3768186 (+)
G59112 NA non-coding downstream 154251 3890574 ~ 3914402 (+)
G59115 NA non-coding downstream 159251 3895574 ~ 3946612 (+)
LOC117597093 NA non-coding downstream 169527 3905850 ~ 3911746 (+)
G59124 NA non-coding downstream 238962 3975285 ~ 3975971 (+)
LOC113525491 NA other upstream 80396 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 98346 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 893947 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 1012235 2716149 ~ 2716221 (+)
trnav-aac_11 NA other upstream 1012906 2715478 ~ 2715550 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 2978 3739301 ~ 4061514 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 312829 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other downstream 554295 4290618 ~ 4296465 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 796598 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 914154 4650477 ~ 4653121 (+)

Expression


Co-expression Network