LOC113545588 (LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217)


Basic Information

Item Value
gene id LOC113545588
gene name LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3739301 ~ 4061514 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69947
TGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccaGCCGTTCATACACAGTACAGCAATCCACAGCCACTATGGATCACTGgtGAATCTCCTCCAGTATCTCTGATCATCAATCccagcagaactcaacactttactaatgactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaGATTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCCACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGtCTCAGGTTCTAGATCCGGTGGTGGAACAGTAGGAGTGGCTGTGGGTTTGGGAATTTTGTTCATCGCTTTACTGATCGTAATGATCCTGCTGTGGtcctacaaaagaaaaaaag
>TU69985
GTCAGATATTGTCTCAATGACTgtttattctatatttattaatagaAACTAACATATTTCTTTGAAATTCATTGTAAAATTATCATTCAGTAAATTCATTTGGTTTGTTTGAAATCTATTTTGTCCTTGGAGTCTACAGTAGCTTTTACAACAAATTCAGAAATCTTCATTCTGTTTTCAGTAGAAAGTGAACACATTTATGCCATTGTGGATCAGGCAGATAAAAGTGGAACAGGTGAAGCTGCAGCTGAGAGTGAAGCCACTTACGCACAGGTCacgaagaaaaagaagacaaacagGAACAATGGTGCTGATGCTGAAGCCGGTGTTACTGATGTGACTTATGCTGAGATTCAACTAAAACCAATGAAAAAAGCTAAAAGAATAAAAGAGAAATCCAGTATGGGTGATGATATTGTCTACTCAGAGCTGCAGCAGAACATGGAGtgagCCATGTGTCTATTTACACTGATGAAGCTACAGTCATCAGACAGATAACTGGAGAACCGTGAATCGtgtttgtcttctgtttttcctaAAATGCTCAGCTGTTGAACTTTTAAATTTCTATATTCTAAGCTTGGATGATGCCAAACCTGGCAGCTGCTCTGAGAACTTGCTCACATCATGCATTCACTGATGTACCCTGAAGATATGTGTAAATAACAGAAGTTCAGGCCATGGATCAAGTCATTTTGAGGAGTCTAATGCCCCACCCCCCAACACTCAGATTCCTTGCCCTTATCGGGATGCCATCCCGGGAGAGTGTGACTTGCCTAAGAGGCTTTACTGCTCAAAGACGTTCTTCACTCATATGCTCCTTGTTTTCTGAGGTACAACCCCAGTAAACCAGAGAAGGCGGAG
>XM_034303575.1
aaaatgattatattattattctctgtttttgtgtatttcttaGATACAGACGCAGATGTAAACGAAAGTGAGGAAGACGAGTTTCTGTCGCTTGATGACTTCTCCGCTGCTTCAGCCGGTCTGTTGTATTCTTACAGACTCACGTCTCACACTGTTTTCCTCTACCtgCTCAATTCACTTAAACCAGTGGCCCCTGCTCAAGGGAGTCCTAAAGTCGTGGTGTCCATAAAGCCTGATACACATGTGCTCTTTGGAGAGCGTGTTACTCTCAGATGTGATGTAGAGAGAGGAGGAAGCAGTCACTGGACATACAGctggtataaaaataataacagactCACAGGACATACAATGCAGGAGTTCATAATCCAGTCTGTTGGATACTCTGACAGTGGTGACTACACCTGCACAAGACAACACGTGAGTAACTTTCAGAGCTCAGTGAtcagtgatgctgttacactgactgtatcagCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCTATCTACACTGGAGACACCATCACTCTGAGCTGTGAGCAGCAGTCGACTGGATGGGAGTTTCTCTTCTACgaaaataatcagcagttaAAGCTTCTGAACAGtgaacaagcacacacacttaaagtgACAGTTGATAACGCAGGAGAAACAGTGTACAAGTGTCGTGCACGCAGGAGAAACTATGACtcctactactacaactactacaactactacaacAACGGCTACTACTACACATGGTTCAGTGATCCTGTCAGGATTACAGTGAGAGCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGGAGTTTCTCTGGTACAAATATAATCCTACGTTACAGATTCTGAGCAGtgaacaagcacacacacttaatgtGACAGTCGATAATGCAGGAGAAACAGTGTACCAGTGTCGCGCACACAGGAGAAACTATGATTACTACACAGAGCTCAGTGATCCTGTCAGGATTACAGCGAGAGcaAGACCTAAACCAGTGGCATCCATAAATCCTGATAaacaggtgttcagtggagacGCCGTCACTCTGAGATGTGACATACAGGATGAAAGTGTCTCTAGCTGGCAGTACAGCTGGTATAAAGATGATTCACACAGTCCTGTCAGTAGTGAACAGGGGTACAGGATCAGTGGTGTTGAAGTGACACACAGAGGTAACTACACCTGtagaggagcagagagaggaggcTCACGCTCCTCACACttcagtgatgctgttacactgactgtatcagAGAGACCACAGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCttaactcaaataaaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccaGCCGTTCATACACAGTACAGCAATCCACAGCCACTATGGATCACTGgtGAATCTCCTCCAGTATCTCTGATCATCAATCccagcagaactcaacactttactaatgactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaGATTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCCACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGtCTCAGGTTCTAGATCCGGTGGTGGAACAGTAGGAGTGGCTGTGGGTTTGGGAATTTTGTTCATCGCTTTACTGATCGTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagGTGAAGCTGCAGCTGAGTGTGAAGCCACTTATGCACATGTCacgaagaaaaagaagacaaacagGAACAATGGTGCTGATGCTGAAGCTGGTGTTAGTGATGCGATTTATGCTAATCTTGAACTAAcccattgtGACGGCGGACCGACAGCCCGCGCACGTAAAACATCAAACGCTCCTCGCGCGACTGACGGCGTGCTGCTGAAAAGTCAGCGTCCTTTCAGCACCGCGTTTGTGTTGGACAGCCGGAGTGCGCGTGGCTGTGGGGCGGAGCGACCTAACTCAGCACGGCTGGCGGCCAATGAGTGGCGCGGCTCCTCTTCACCCTCCCGGAGAAGACGAGGAGCTATAAAAGGAGCTCGCGGCCACTCTAGCGGAGGAGAAGGAAGGATGAAGCTATGTGACGTACAGAGAGGAGGAAGCACTCAGCGGACATACAGctggtataaaaataataacagactCACAGACAGGACAATGCAGGAGTTCATAATCCGGTCTGCTAGAGACTCTGACAGTGGTGATTACACCTGCACAAGACAACACATGAGTTACTTTCAGAGCTCAGTGAtcagtgatgctgttacactgactgtatcagCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGGAGTTTCTCTGgtacaaaaataatcagcacTTACAGCTTCTGAACAGtgaacaagcacacacacttaatgtGACAGTCGATAATGCAGGAGAAACAGTGTACCAGTGTCGCTCACACAAGAgagactactactactactactacgacTACTACTACACAGAGTTCAGTGATCCTGTCAAGATTACAATGAGAGcaAGACCTAAACCAGTGGCATCCATAAATCCTGATAAACAGGTGGTCAGTGGAGACGCCGTCACTCTGAGATGTGACATACAGGATGAAAGTGTCTCTAGCTGGCAGTACAGCTGGTATAAAGATGCTTCACACAGTCGTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACGCAGGTAAATACACTTGtagaggagcagagagaggaggctcacactcctcacacttcAGTGATGTTGTTACActgactgtatcagAGAGACCACGGGCAGCACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAAACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCttaactcaaataaaaaataatcgtGGCTATATCATGTATGTGGAGCTCCTCTCAGATAGCAGCAGAGGATCTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGGTGAATCTTCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttactaattactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTTCCCCTCCACATCCCACACTGGAGTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTCTGACTGAGGGACATCCTCTGACTCTACACTGTTTATATCACAACACAAATTCCTCAAACCTTCGAGCTGATTTCTATAAAAATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGtCTCAGGTTCTAGATCAGGTGGTGGAACAGTAGGAGTGGCTGTGGGTTTGGGATTTTTGTTCTTCGCTTTACTGATCTTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagAAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACACCACTTCAGGCTGTAGAAAGTGAACACATTTATGCCATTGTGGATCAGGCAGATAAAAGTGGAACAGGTGAAGCTGCAGCTGAGAGTGAAGCCACTTACGCACAGGTCacgaagaaaaagaagacaaacagGAACAATGGTGCTGATGCTGAAGCCGGTGTTACTGATGTGACTTATGCTGAGATTCAACTAAAACCAATGAAAAAAGCTAAAAGAATAAAAGAGAAATCCAGTATGGGTGATGATATTGTCTACTCAGAGCTGCAGCAGAACATGGAGtgagCCATGTGTCTATTTACACTGATGAAGCTACAGTCATCAGACAGATAACTGGAGAACCGTGAATCGtgtttgtcttctgtttttcctaAAATGCTCAGCTGTTGAACTTTTAAATTTCTATATTCTAAGCTTGGATGATGCCAAACCTGGCAGCTGCTCTGAGAACTTGCTCACATCATGCATTCACTGATGTACCCTGAAGATATGTGTAAATAACAGAAGTTCAGGCCATGGATCAAGTCATTTTGAGGAGTCTAATGCCCCACCCCCCAACACTCAGATTCCTTGCCCTTATCGGGATGCCATCCCGGGAGAGTGTGACTTGCCTAAGAGGCTTTACTGCTCAAAGACGTTCTTCACTCATATGCTCCTTGTTTTCTGAGGTACAACCCCAGTAAACCAGAGAAGGCGGAGAACTCTGGAATAGTGTTTCAATCTCTGTGATCTCTATGCAATCTCtatatgtgtttttaaatccagatttttTCTAGTCAGAGATAAACAAGTAATGAAGTTACTTGTTTATCTCTGACTAGTCATAGTCCATATTTATCTTGTTAAACATACTTCATGATTAGTAGtagcataattataaatatatatataagtcgTTACAGTTTTTCACAATTGCTAACTGGCAGTCTTTGGTTCCAAGTTTACTTTTTAGGAATTTGTTAGAATAACAGTGCTTTATGTGGAACAAACAATAGAATGAACTGCAGTGAGTTTAAGTGTAAACAGTTATTACTCCTGGTGAGTaaactgatatacagtataaagtatatagtatacactatatggtcaaaagtttgtggacacctgaccatcacactcatatgtggttcttccccaaactgttgccacaaagtttgaagcacacaattgtatgggatgtctttgtatgctgtagcattacaatttcctttcactggcaGTAAGGAGTCTAGTCCAAATccgtttcagcatgacagtccccctgtgcacaaagcaagctccatgaagatatggtttgccgAGGATGGAGTGGAAAAAAtcaagtgacctgcacagaacactgacctcaaccccactgaacacctttgggatg

Function

NR:

description
PREDICTED: obscurin-like protein 1 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69947 False 548 TUCP 0.47 3 3850423 3852567
TU69985 False 864 lncRNA 0.40 5 4058274 4060841
XM_034303575.1 True 5647 mRNA 0.45 26 3739301 4061514

Neighbor

gene id symbol gene type direction distance location
wdr60 NA coding upstream 140787 3586625 ~ 3598514 (+)
LOC117597046 NA coding upstream 218653 3501809 ~ 3520648 (+)
dnajb6b dnajb6 coding upstream 550834 3149618 ~ 3188467 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding upstream 590105 3139120 ~ 3149196 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding upstream 600442 3132940 ~ 3138859 (+)
LOC117597051 LOC108261462,LOC108261092 coding downstream 29283 4090797 ~ 4117049 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 254264 4315778 ~ 4334167 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 333971 4395485 ~ 4408386 (+)
LOC117597057 NA coding downstream 356035 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 402424 4463938 ~ 4513463 (+)
LOC117597098 NA non-coding upstream 80166 3658157 ~ 3659135 (+)
G59085 NA non-coding upstream 83378 3655711 ~ 3655923 (+)
G59030 NA non-coding upstream 137234 3601563 ~ 3602067 (+)
G58999 NA non-coding upstream 200543 3536905 ~ 3538758 (+)
G58864 ptprn2 non-coding upstream 470970 3263703 ~ 3268331 (+)
LOC117597097 NA non-coding downstream 56272 4117786 ~ 4118590 (+)
G59304 NA non-coding downstream 493881 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 602097 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 604498 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 608349 4669863 ~ 4670083 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 2978 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 91241 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 109191 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 904792 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 1023080 2716149 ~ 2716221 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other downstream 229104 4290618 ~ 4296465 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 471407 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 588963 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 645928 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 885623 4947137 ~ 4956467 (+)

Expression


Co-expression Network