G59124


Basic Information

Item Value
gene id G59124
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3975285 ~ 3975971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69961
ctgtcagcagtcacatcatcaataaacaccagtgagcctgttccattggcagccatacatgcccatgccataacactgcctccaccatgtttgacacatgatgtggtatactttggatcatgagctgttcctttctttcgccatgagatctccttggacttcatattggtagctccagtcgaacagctgccaaatgccaactcaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69961 True 206 lncRNA 0.47 2 3975285 3975971

Neighbor

gene id symbol gene type direction distance location
wdr60 NA coding upstream 376771 3586625 ~ 3598514 (+)
LOC117597046 NA coding upstream 454637 3501809 ~ 3520648 (+)
dnajb6b dnajb6 coding upstream 786818 3149618 ~ 3188467 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding upstream 826089 3139120 ~ 3149196 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding upstream 836426 3132940 ~ 3138859 (+)
LOC117597091 LOC108261462,LOC108261092 coding downstream 12782 3988753 ~ 4042869 (+)
LOC117597099 NA coding downstream 29182 4005153 ~ 4006341 (+)
LOC117597051 LOC108261462,LOC108261092 coding downstream 114826 4090797 ~ 4117049 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 339807 4315778 ~ 4334167 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 419514 4395485 ~ 4408386 (+)
G59115 NA non-coding upstream 28673 3895574 ~ 3946612 (+)
G59112 NA non-coding upstream 60883 3890574 ~ 3914402 (+)
LOC117597093 NA non-coding upstream 63539 3905850 ~ 3911746 (+)
G59104 NA non-coding upstream 207099 3767838 ~ 3768186 (+)
LOC117597098 NA non-coding upstream 316150 3658157 ~ 3659135 (+)
G59136 NA non-coding downstream 71068 4047039 ~ 4051248 (+)
G59139 NA non-coding downstream 78339 4054310 ~ 4055230 (+)
LOC117597097 NA non-coding downstream 141815 4117786 ~ 4118590 (+)
G59304 NA non-coding downstream 579424 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 687640 4663611 ~ 4664466 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 238962 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 327225 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 345175 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 1140776 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 1259064 2716149 ~ 2716221 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 73181 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other downstream 314647 4290618 ~ 4296465 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 556950 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 674506 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 731471 4707442 ~ 4708398 (+)

Expression


Co-expression Network