LOC117597054 (LOC108261095,LOC108261462,LOC108261092)


Basic Information

Item Value
gene id LOC117597054
gene name LOC108261095,LOC108261462,LOC108261092
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4049152 ~ 4394005 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69979
CCTAAAGCCGTGATATCTGTAAAGTCTGATACACACGTGTTCATTGGAGAGACTGTTACTCTCAGATGTGACGTACAGGGAGGAGGAAGCACTCAGTGGCCATACAGCTGGTTTCAAGATAATAGAAGACTCTATGAATATGGAGGCAATTCAGCCATCACAGCGCAGGAAATCATTATCCATGCTGATAAAAACTCTGACAGTGGTTACTACACCTGCAGGGGACAGTATTCAGAGATCAGTGTTGCTGTTGCActgactgtatcagCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGGAGTTTCTCTGgtacaaaaataatcagcagttACAGCTTCTGAAGAGtgaacaagcacacacacaagtgacaGCCGATAATGCAGGAGAAACAGTGTACCAGTGTCGCGCACGCTGGAGAAACTACAACTACTACACAGAGTTCAGTGATCCTGTCAAGATTACAGTGAGAGAGAGACCACGGGCAGCACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTAACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCttaactcaaataaaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTTCATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagccgttcacacacagtacag
>TU70012
cGCCGTCACTCTGAGATGTGACATACAGGATGAAGGTGTCTCTAGCTGGCAGTACAGCTGGTATAAAGATGCTTCACACAGTCCTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACACAGGTAAATACACCTGTAgagcagcagagagaggaggctcacactcctcacacctcagtgatgctgttacactgactgtatcagAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGAC
>XM_034303589.1
atgggaaagaaTGTAAGTGGGTcaAGGCCTAAACCAGTGGCATCCATAAATCCTGATAaacaggtgttcagtggagacGCCGTCACTCTGAGATGTGACATACAGGATGAAGGTGTCTCTAGCTGGCAGTACAGCTGGTATAAAGATGCTTCACACAGTCCTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACACAGAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCTTAACTCAAATAACAGATAGTCGTGGCTATATCATGTATGTGGAGCTCCcctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTTCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcatTCCACAGCCACTATGGATCACTGgTGAATCTCCCCCAGTATCTCTGATCATCAATCccagcagaactcaacactttaCTGATGACTCTCTTTCACTGAGCTGTGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaGATTGTTCGTCAGTTACAGGATCTACATGTAAAATCAGCTTCCcttccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACACTGTTTATATCGCAACACAAAGCCCTCATACCTCCGAGCTGATTTCTATAGAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCAAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGATCTTAGTCAGAGtgtcAGGTCCATCATGTGTAGAAGCTCCATTCTCAGGGCTCATGCTGATCAGTAGTGTAGTGACAGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGagAAACAGCAAGTGTTGAAGATTTTTCaggaaagaggaaggaagagcAGATACAAAcctgtgatgctctTGTTGGTTTCACTTACACCAGTGGCCCATGCTCAAGGGAGTCCTAAAGCTGTGATATCTGTAAAGCCTGATACACACGTGTTCATTGGAGAGACTGTTACTCTCAGATGTGACGTACGAAGAGGAGGAAGCACTCAGTGGCCATACAGCTGGTATAAGAATAATAGAAGACTCTATGAATATGGAGGCAATTCAGCCATCACAGCGCAGGAAATCATTATCCATGCTGATAAAAACTCTGACAGTGGTTACTACACCTGCAGGGGACAGTATTCAGAGATCAGTGTTGCTGTTGCActgactgtatcagCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGGAGTTTCTCTGgtacaaaaataatcagcagttACAGCTTCTGAAGAGtgaacaagcacacacacaagtgacaGCCGATAATGCAGGAGAAACAGTGTACCAGTGTCGCGCACGCTGGAGAAACTACAACTACTACACAGAGTTCAGTGATCCTGTCAAGATTACAGTGAGAGAGAGACCACGGGCAGCACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTAACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCttaactcaaataaaaaataatcgtGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTTCATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagccgttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTATCTCTGATCATCAATCCCAACAGAACTCAACACTTTAGTCatgactctctctcactgagctgtGAAGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaGATTGTTCATGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTCACtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTTCAGACAAAGACTACAGGAGAGATGATCCTCTATAACGTCTCAAAGTCAGATGAAGGTTTCTACCACTGCAAACacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGGTCCATCATGTGTAGAAGCTCCATTCTCCGTGCTCATGCTGGTCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCACACTGATGAAGAGAGAATTGAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAACAAAAAGACGAAgtgtttaatgtaaaaataatttcataatttattgTTCTCTAGGGCTTTGTggggtttttaaaataatactgatttgtcattttaatgtcatgctgttatttgcTCAGCATCTTATAGACACCCTCGTTGTTCTGACTGGATTTGTTTAGCTAAAGCCTGCAAACCTCCTCATGAGGTGAAAGTTACCATGTATGTAGTTTCTAATAAACCTTACATGCTGCTAATGCAGTACAGAGTAACAACGaacaaatattctttaaaaatatatattggtGAAGAGAAAATTTTGATGCATTGTCTGAGGATTGAACTCTGCAAAATAACATCTGACATGTGGGAAATAAATGTGTCTGCTATTGGACTGAGTTTAATCCCAACATGGAGACCTGCACATTAAAACCTCAAAACACTTCATCTAACTGTAATGAGGTTTAAGCAAACACAGTAATCTGTGCAAGATGGTTGCTTTATGTCCAGAAAATATAGAGTGATACTCTACTCTGTCAGTCGCTGGACCTGTCTTAATGCAAATCACGCCATCGTATGGTTTTATTCCATGGAAGGAAATGAGATGAAACAGGATTAAGTGCAAGATGGAAACTAGCATCGTTGGGAGGAAACTAAAGACTAGTAGGTTTATTCTGTGCTAGAACATGCACTACTGAGATTTGCTTAATATACAGAGAGTGTATATGGCAGTGGTTTTCAAAGTGTGGGTCATGTCCCCTGGGGGGGCACACAGGTACTGCAGGGGGGGCACCagagttcaaaaaaaaaaaaaaaaaaaaaaaaaaacagccaatgGACGTAGCATGGAAGATGGATCGGTTTGCGAAAGGGAAGAGAAAAGCCGTAGATGAGGTCACACAGACATCCCAGTCAGGTGCTGGTCATCTGGTCATTGATAAGCTAAATGCAGAAAATATGATGAGGCATATCTTACTCTCGGCTTCACTGTTAATGTGGTTAGTGAAGAGGAGAGACCTATGTGTGTCCTATTTCTTAAAAATTAAGAAGACACATTGAGACGATACGTCCTAATTATGTTCAAAAGCCactgttttaaaagaaaacctGATCAATATTGTGGGCAGCATAGGCATTTTCTAAAAGCCACTTCAGCAACAACTTCTGGCTTCGTACAAAATTGTGTATAGCATTACACAATGCAAGAAATCACACACGATTGCAGAAGAGTTGATTCTTCCTGCTGCCATAGATATGGTGTCAGTTATGCTTGATGATGCAAGTGTCACGAAATTAAAGACTATCCCCGTGTCTAATGACACCATATCAAGACTAATTTTTGATAATGCAAATGACTTGGAGGAACAGCTTATTGAGAAAATAAAAGGGAAAAGCTTTGTGCTTCAAGTTAACGAGGCCACTGACAGTACCAAGGACAGTTTGttaacagtgtatgtgtgtttcatgCACTATGTGCACCTGATCTTGTTCTGTTTAATGATTCAACGGCAACACCATTGTgatttcaaaaatgttaaaatatgtaatttcagttaaaaaattattcaatttTCATGACTTTTAGTGAAATTAATTGGAGGGGGGGATACAGGTTTAAAGGGGGCAGGaccaaaaaagtttgagaagcaCTGGTATATGGTATAAACTGCATTATTTCAGAAGGAAAATGTGCAGTGTAATATTTTCCAGTGTAGGTTGTATTTTCTGTATAGATGACTACAGTCAgagtgtttggggaaaagcccAGTGTTACTGGAGTTAAAGTAAGTGAGGCTTTGTATGtatgcaatataaaaataagttcATTGACTGTTATCTGAAATATGGTGGGAACtaatattgtgttttgtgtcttcTCAGTATTAGTTCTaccactactgtatttgtactgCTGTGTTTTCTTCTATTTCTGTGTGAGATTAGCTCTAGTTGAATTACGAGGAGTAAATTTCCAATCTCAGTTAGACACTGTTGTTAGTTTTGTTTGACTTTTCAGCTGTGTGAACTTTAATTGTAGTTGTGTGAGGAGATTTGTGGATGAAATGTTTTGAtctattaaataaatgcatcattaTCAGTTCACTGAATTATTTAACCTGGTAGCAATAATGTATCATATGAAGTACAAGTAATACACTGAGAAAACACTTGTGTCTTTGTCAATATCAGCACTTTtaccattttgtattttttatacaaTGATGTACTGGAGCTAAAACATTTACGGAgccaaaat

Function

NR:

description
PREDICTED: uncharacterized protein LOC108261095

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69979 False 848 lncRNA 0.48 4 4049152 4386806
TU70012 False 321 lncRNA 0.50 2 4372121 4372557
XM_034303589.1 True 5113 mRNA 0.42 16 4371557 4394005

Neighbor

gene id symbol gene type direction distance location
LOC117597091 LOC108261462,LOC108261092 coding upstream 6283 3988753 ~ 4042869 (+)
LOC117597099 NA coding upstream 42811 4005153 ~ 4006341 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding upstream 68532 3973201 ~ 3980620 (+)
wdr60 NA coding upstream 450638 3586625 ~ 3598514 (+)
LOC117597046 NA coding upstream 528504 3501809 ~ 3520648 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 1480 4395485 ~ 4408386 (+)
LOC117597057 NA coding downstream 23544 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 69933 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding downstream 85493 4479498 ~ 4487366 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 345565 4739570 ~ 4746302 (+)
G59124 NA non-coding upstream 73181 3975285 ~ 3975971 (+)
G59115 NA non-coding upstream 102540 3895574 ~ 3946612 (+)
G59112 NA non-coding upstream 134750 3890574 ~ 3914402 (+)
LOC117597093 NA non-coding upstream 137406 3905850 ~ 3911746 (+)
G59104 NA non-coding upstream 280966 3767838 ~ 3768186 (+)
G59304 NA non-coding downstream 161390 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 269606 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 272007 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 275858 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 276975 4670980 ~ 4671460 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 312829 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 401092 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 419042 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 1214643 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 1332931 2716149 ~ 2716221 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 138916 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 256472 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 313437 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 553132 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 580190 4974195 ~ 5014813 (+)

Expression


Co-expression Network