LOC113547236 (LOC108261305,LOC108261462,LOC108268217)


Basic Information

Item Value
gene id LOC113547236
gene name LOC108261305,LOC108261462,LOC108268217
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4290618 ~ 4296465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70002
ATCCTGCTGTGGtcctacaaaagaaaaaaagGTGCTGATGCTGAAGCTGGTGTTAGTGATGCGATTTATGCTAATCTTGAACTAAAAccaatgaaaaaatgaaaagagaataaaagtgagCCTTGTGTCTGTGTCCACTGATGAAGTTACAGTTATCAAACAGATCGCTGGAAAACTGTGATTTGtgtttgtcttctgtttttcctaAAACGCTCAGAGTAGTAAAGTCTGCTCATCCCCTTCCTGTACCCAAGAA
>XM_034303816.1
AGAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACGCAACTGTTCCCTACAGAGATGGCTTAActcaaataaaacataatcgTGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTTCATCACACAGGAGTTTATATGtgcagaggagggagaggagaacCAGCtgttcacacacagtacagcaaTCCACAGCCAATATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttgCTCatgactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAACATCAGCTTCCtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGtCTCAGGTTCTAGATCCGGTGGTGGAACAGTAGGAGTGGCTGTGGGTTCGGGAATTTTGTTCATTGCTTTACTGATCTTAATGATCCTGCTGTGGtcctacaaaagaaaaaaagAAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACACCACTTCAGGCTGGTGCTGATGCTGAAGCTGGTGTTAGTGATGCGATTTATGCTAATCTTGAACTAAAAccaatgaaaaaatgaaaagag

Function

NR:

description
PREDICTED: carcinoembryonic antigen-related cell adhesion molecule 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70002 False 256 lncRNA 0.39 3 4293289 4296465
XM_034303816.1 True 898 mRNA 0.47 5 4290618 4295137

Neighbor

gene id symbol gene type direction distance location
LOC117597051 LOC108261462,LOC108261092 coding upstream 173569 4090797 ~ 4117049 (+)
LOC117597091 LOC108261462,LOC108261092 coding upstream 247749 3988753 ~ 4042869 (+)
LOC117597099 NA coding upstream 284277 4005153 ~ 4006341 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding upstream 309998 3973201 ~ 3980620 (+)
wdr60 NA coding upstream 692104 3586625 ~ 3598514 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 19313 4315778 ~ 4334167 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 99020 4395485 ~ 4408386 (+)
LOC117597057 NA coding downstream 121084 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 167473 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding downstream 183033 4479498 ~ 4487366 (+)
LOC117597097 NA non-coding upstream 172028 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 235388 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 239370 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 314647 3975285 ~ 3975971 (+)
G59115 NA non-coding upstream 344006 3895574 ~ 3946612 (+)
G59304 NA non-coding downstream 258930 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 367146 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 369547 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 373398 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 374515 4670980 ~ 4671460 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 229104 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 554295 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 642558 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 660508 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 1456109 2821311 ~ 2834509 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 236456 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 354012 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 410977 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 650672 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 677730 4974195 ~ 5014813 (+)

Expression


Co-expression Network