G59264 (LOC108261305)


Basic Information

Item Value
gene id G59264
gene name LOC108261305
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4330091 ~ 4374638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70120
CTGGTATCAGATATCGATTAgatactgtgctcatttactGCTACTAGTAAAACTATTATCTACTACTAGAATATACATATCCATACTCAGAATTACAGAAATTTCTGTTAatatactgagaaaaaaaattgctgtctTCCTTAACAGTTTTTCCCATTTATAAACTCAGAGTTCtgaatattttgtaattaaacatttcccttttccttaaacaataaacacactacATGAAGACTCACCATGCACTGTGATGTTGACAGGATTACTGTTTTCTCCAGATTCAGACTCACACCAGTAAActccagtgtgtgatgtggaagGGAAGCTGATTTTACATGTAGATCCTGTAACTGATCCCCACCGTGAACAAtctaacactccc

Function

NR:

description
PREDICTED: carcinoembryonic antigen-related cell adhesion molecule 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70120 True 382 lncRNA 0.35 2 4330091 4374638

Neighbor

gene id symbol gene type direction distance location
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding downstream 45699 4269168 ~ 4284392 (-)
LOC117597100 NA coding downstream 605526 3710571 ~ 3724565 (-)
LOC113525490 LOC108261092,LOC108261462 coding downstream 619544 3704774 ~ 3710547 (-)
esyt2b esyt2 coding downstream 747079 3538315 ~ 3583012 (-)
LOC117597049 ncapg2 coding downstream 795272 3526493 ~ 3534819 (-)
maf1b maf1,LOC108268258 coding upstream 139965 4514603 ~ 4527107 (-)
LOC113547216 NA coding upstream 230534 4605172 ~ 4609562 (-)
LOC113547217 LOC108268239 coding upstream 238390 4613028 ~ 4633265 (-)
LOC113547273 LOC108268233 coding upstream 259687 4634325 ~ 4640284 (-)
LOC113547271 LOC108268229 coding upstream 276056 4650694 ~ 4660380 (-)
G59223 NA non-coding downstream 48192 3902938 ~ 4281899 (-)
LOC113537515 LOC106515577 non-coding downstream 106636 4221877 ~ 4223455 (-)
G59249 LOC108268217,LOC108261462 non-coding downstream 131952 4197328 ~ 4198139 (-)
LOC117597094 NA non-coding downstream 175006 4146816 ~ 4155085 (-)
LOC113547221 NA non-coding downstream 372998 3914583 ~ 3957093 (-)
G59287 NA non-coding upstream 111879 4486517 ~ 4487970 (-)
G59303 NA non-coding upstream 180062 4554700 ~ 4554909 (-)
G59385 NA non-coding upstream 185095 4559733 ~ 4560510 (-)
LOC117597175 LOC108268239 non-coding upstream 206303 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding upstream 215706 4590344 ~ 4591768 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 73807 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 119985 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 409960 3894592 ~ 3920131 (-)
si:ch73-174h16.4 LOC108268225 other downstream 690883 3629988 ~ 3639208 (-)
G59069 NA other downstream 739354 3586783 ~ 3590737 (-)
LOC117597059 LOC108268206,LOC108268239 other upstream 186150 4560788 ~ 4571827 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other upstream 267382 4642020 ~ 4647880 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 553722 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 708170 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 1103904 5478542 ~ 5494039 (-)

Expression


Co-expression Network