G59338 (LOC108268240)


Basic Information

Item Value
gene id G59338
gene name LOC108268240
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4663611 ~ 4664466 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70208
ctgagtttattgctctattttgctcTCTACTGGAAAAACcgagacttttttcttttttcacaattttaatcTTTCAGTTCAATTACACTCCACAAGATGAATTCTACAAAATCAAAATTCATTTGTTGGGTTGGATTAGTACTTGTATTTGGCCCGTCCTGTCCCATGGGCCATGTATACACACTACTTTTGATGGGACTACACCACCATTTGCtacaagaattaaaaaaaaaaaaactcctccttagtagtattttttaaaaatataatattacattgGTGTAAGCTTAACACCATAGAGTTTCTAtggaaaaattatttcagtttgaacaggtgtgatgatcagtggtgCTGAGTTTTTACCTCCATTATTAAGAGAAGGGCTGAAGAATGGATAAATTTTTCCATTAAAAGTCTGACCAGTGAAAGCGTAGATAAGAGACTTGGCGTCAACATTATAGAAGGAGATCAGACCCTCCTCATAATCCACAAACACCCCCACCTTCTGAGGAGTCTGTTTCAAGGAGAGGGTAACAGGAGGAGAGTCACAAGCCTTATATTCAGTATTATTCCTCAGACATAACACCCAGTATCCATTTTCAGTGCTGTATTTAATCTCCCCTTTCCTACTAACACACTCTCTGGCCACTCCTATATCCCACTTAGTCTTCCCTCGGATCTGCACCTCATAGTAAAACCTCCCTGAAGAAAATCCTTCCTTTCCCAGTATGCAAGGACAATGATCGAATCGCTTCTCATTATCAGGAAGCTTTTGTCTCAAATCTCCATGTCTCACTTGTTTCCCATCATCAGACAGGATCAGCGCAGGATTTGCTGTATCGGGATCCAAAGTCAC

Function

NR:

description
PREDICTED: zinc finger protein RFP-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70208 True 856 lncRNA 0.39 1 4663611 4664466

Neighbor

gene id symbol gene type direction distance location
LOC117597089 NA coding upstream 150148 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 176245 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 232605 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 255225 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 329444 4315778 ~ 4334167 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 75104 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 109720 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 141188 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 215334 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 232502 4896968 ~ 4913622 (+)
G59304 NA non-coding upstream 108012 4555395 ~ 4555599 (+)
LOC117597097 NA non-coding upstream 545021 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 608381 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 612363 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 687640 3975285 ~ 3975971 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 1546 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 5397 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 6514 4670980 ~ 4671460 (+)
G59329 NA non-coding downstream 12701 4677167 ~ 4698795 (+)
G59478 NA non-coding downstream 285834 4950300 ~ 4950651 (+)
LOC117597167 NA other upstream 10490 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 110573 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 269606 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 367146 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 602097 3739301 ~ 4061514 (+)
G59366 ube3c other downstream 42976 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 282671 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 309729 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 515088 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 723902 5388368 ~ 5391829 (+)

Expression


Co-expression Network