G59366 (ube3c)


Basic Information

Item Value
gene id G59366
gene name ube3c
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4707442 ~ 4708398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70239
TTGAACAGCTGGACCCAGCGTTTCTGTTGGTTCTGGATGCGCTGCTGCACTTGGCTGCTGGTTTTGACTCCGACGCTGCGGAAGGCGGCTGCGTATTCCTCCCTGTGGCCGCTCTTAGTCTCGGGATGCGCCAGCTTGATGATCCCCAGACACGCATCACGCAAACACCGGGACAGAGTCACCAACTCCGGGAGAGAGAACGGCATCATGGACGCCTGCCTCTGACCTGCAgcgaaaaCATCCATGGCTTCCCCGAAGAACTCTGTGTCGTGGATGGAGATGAGCGAGTGGCTGAACAGCGAGCTGAACAGGTAGAAGAGAGGGATGATCCTGCTCGAGTCCTCAGCAGACATGGGAGAGCCGCGAGACATCAACTGCAGCAACGGC

Function

symbol description
ube3c Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human UBE3C (ubiquitin protein ligase E3C).

NR:

description
PREDICTED: ubiquitin-protein ligase E3C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70239 True 387 TUCP 0.58 2 4707442 4708398

Neighbor

gene id symbol gene type direction distance location
LOC117597089 NA coding upstream 193979 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 220076 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 276436 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 299056 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 373275 4315778 ~ 4334167 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 31172 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 65788 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 97256 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 171402 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 188570 4896968 ~ 4913622 (+)
G59329 NA non-coding upstream 8647 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 35982 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 37359 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 40987 4666012 ~ 4666455 (+)
G59338 LOC108268240 non-coding upstream 42976 4663611 ~ 4664466 (+)
G59478 NA non-coding downstream 241902 4950300 ~ 4950651 (+)
G59479 NA non-coding downstream 243973 4952371 ~ 4952598 (+)
G59483 NA non-coding downstream 249664 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 303522 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 555618 5264016 ~ 5266014 (+)
LOC117597167 NA other upstream 54321 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 154404 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 313437 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 410977 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 645928 3739301 ~ 4061514 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 238739 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 265797 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 471156 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 679970 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 871398 5579796 ~ 5596225 (+)

Expression


Co-expression Network