LOC117597175 (LOC108268239)


Basic Information

Item Value
gene id LOC117597175
gene name LOC108268239
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4580941 ~ 4596531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70266
CAGTcattagagagacaggatggagctcagtccactccctgtgatgctctTGCTGATTTCACTTAAACCAGTGGCACATGCTCaagGGAGTCCTAAAGCTGTGGTGTCCATAAAACCTGATGAAAATGTGTACATTGGAGAGAGAGTTACTCTCAGATGTGACGTACAGGAAGGAGGAGACACTGAGTGGACATACAGCTGGTATAAGAATAATGACAGACTCTACgtagagagaggagaca
>XR_004578075.1
GTcattagagagacaggatggagctcagtccactccctgtgatgctctTGCTGATTTCACTTAAACCAGTGGCACATGCTCaagGGAGTCCTAAAGCTGTGGTGTCCATAAAACCTGATGAAAATGTGTACATTGGAGAGAGAGTTACTCTCAGATGTGATGTACAGGAAGGAGGAGACACTGAGTGGACATATAGCTGGTATAAGAATAATGGTagactctacacagagagaggagacagagtcTATACAGACAAACACAATGCAGGAGTTCAGTATCGGGTCTGTTAGTGACTCTGACAGTGGTGACTACACCTGTCGAGGACAGAGACGTGactctcagagctcagagatCAGTGATACTGTTACActgactgtatcagAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTAAAGACTGGACATTCAGCTGGTACAGAGAGGTTCTCTACAGAGACAATAATGGTCATATCAGATATAATGTAGTGCTCctctcagacagcagcagaggat

Function

NR:

description
PREDICTED: carcinoembryonic antigen-related cell adhesion molecule 8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70266 False 242 lncRNA 0.46 3 4580941 4596531
XR_004578075.1 True 574 lncRNA 0.46 4 4593407 4596529

Neighbor

gene id symbol gene type direction distance location
maf1b maf1,LOC108268258 coding downstream 53834 4514603 ~ 4527107 (-)
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding downstream 296549 4269168 ~ 4284392 (-)
LOC117597100 NA coding downstream 856376 3710571 ~ 3724565 (-)
LOC113525490 LOC108261092,LOC108261462 coding downstream 870394 3704774 ~ 3710547 (-)
esyt2b esyt2 coding downstream 997929 3538315 ~ 3583012 (-)
LOC113547216 NA coding upstream 8641 4605172 ~ 4609562 (-)
LOC113547217 LOC108268239 coding upstream 16497 4613028 ~ 4633265 (-)
LOC113547273 LOC108268233 coding upstream 37794 4634325 ~ 4640284 (-)
LOC113547271 LOC108268229 coding upstream 54163 4650694 ~ 4660380 (-)
LOC113547274 LOC108268240 coding upstream 66609 4663140 ~ 4672185 (-)
G59385 NA non-coding downstream 20431 4559733 ~ 4560510 (-)
G59303 NA non-coding downstream 26032 4554700 ~ 4554909 (-)
G59287 NA non-coding downstream 92971 4486517 ~ 4487970 (-)
LOC117597095 NA non-coding downstream 169909 4363084 ~ 4411032 (-)
G59264 LOC108261305 non-coding downstream 206303 4330091 ~ 4374638 (-)
G59398 NA non-coding upstream 80634 4677165 ~ 4678736 (-)
G59416 NA non-coding upstream 160900 4757431 ~ 4757765 (-)
G59559 NA non-coding upstream 273629 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 361186 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 525605 5122136 ~ 5129619 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 9114 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 324657 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 370835 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 660810 3894592 ~ 3920131 (-)
si:ch73-174h16.4 LOC108268225 other downstream 941733 3629988 ~ 3639208 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other upstream 45489 4642020 ~ 4647880 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 331829 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 486277 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 882011 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1303718 5900249 ~ 5959545 (-)

Expression


Co-expression Network