LOC113547272 (LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232)


Basic Information

Item Value
gene id LOC113547272
gene name LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4642020 ~ 4647880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70276
taataataataataataataataataatagtgcatAACGCATTATATAGAGCATTTAcactagaaataaaattatatataaaaaaatcccaaacttcTCAGGCTCATGATAAACCCCCTCCACTCGGCTGATGGTTGGAGAGACTTCATGCTGCATTTCACAGGAAACGAAACTTAAAAGTTTGACGTGAAACCcgccaaaacttttttttttttcttcccccagCGTGACGCTTCTGCAGTGTTTCTCTGAGGAATCAAAACCACAGCAGATCATTGTACGTGCCTCCTAGATGAGTCATGGCTTCCTCCAGCAGCGTCCTGTACGAAGATCAGCTCCAGTGCTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTAAGATGTGTCTGAAAAAGTgctgggacaccagtccatacTGCCAGTGTCCAATGTGTAAGGAGGATTTCCCCAAAAGACCTGAGCTTCGTGTGAATACGTTCATCTCTGAACTGGCTGCTCAGTTTAAGAAGTCAGTTCAGGTGAAATCCAGCAGCATTGCAGATCCACTTCTCTCCAATATTAAAAAGATTCTGTGTGACTCCTGCACTGAGGAAAAGCTGGAAGCTCTAAAGTCCTGT
>XM_026947529.2
ACTCGGCTGATGGTTGGAGAGACTTCATGCTGCATTTCACAGGAAACGAAACTTAAAAGTTTGACGTGAAACCcgccaaaacttttttttttttcttcccccagCGTGACGCTTCTGCAGTGTTTCTCTGAGGAATCAAAACCACAGCAGATCATTGTACGTGCCTCCTAGATGAGTCATGGCTTCCTCCAGCAGCGTCCTGTACGAAGATCAGCTCCAGTGCTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTAAGATGTGTCTGAAAAAGTgctgggacaccagtccatacTGCCAGTGTCCAATGTGTAAGGAGGATTTCCCCAAAAGACCTGAGCTTCGTGTGAATACGTTCATCTCTGAACTGGCTGCTCAGTTTAAGAAGTCAGTTCAGGTGAAATCCAGCAGCATTGCAGATCCACTTCTCTCCAATATTAAAAAGATTCTGTGTGACTCCTGCACTGAGGAAAAGCTGGAAGCTCTAAAGTCCTGTCTGCACTGTGGGGTTTCTCTCTGTAGCACTCATTTGCTGTTTcataaaacaacagcaaaattcAAAAGGCACAAACTGATTGACCCtgtggagaacctggaggactACATCTGTCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTAGAGACgaccagatgtgtgtgtgtcagttctgCACTGAGGGAGACCACAAAACTCACAACACTGTTCCTATAGAAAAGGAGAGTGTTGTGAAGAAACGTCAGCTGGGGGAGACCCAGGCAGCAGTTCAGCAGATGATCAAGAACCGACTAAAGAAGATCGAAGAAGTCAAAGAATCTGTAAAACTCAATAAGATGAGcacagagaaggagaaagcaGAAAGCATGGAGGTATTCAGAGCTCTGATGCACTGCATCGAGAGAAGCCAAGCTGAACTACTTAAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGAGTTCATTAAAGAGCTGGAGAAGGAAATCACTGAGCTAAAGAGGAGAAACACTGAGCtgaagcagctctcacacactgaggATCATCTCCACCTCCTACAGATTTTCCCGTCACTGCGCAGCCCTCTACCAACCAAGGACTGGACCGACATCACAATTAACTCTCATCTGAGTTTGGAGACTCTGAGGACTCAGCTTCAGGAGTCTCTCAATGAAGAAATGGAGAAGTTTCCTGAAAACAagctgaagaacattgaacagCATGCAGTGGCAGTGACTTTGGATCGTAATACAGCAAATTTTTACCTCATGTTGTCTGATGATGGGAAACAAGTTACATGTGGACACTGGCGACACAAACTGCCTGATAACCCAGAGAGGTTTGATTATTGTGCCTGTGTGCTGGGAAAGGAGGGATTCTCCTCAGGCAGATTTTACTATGAGGTGGAGGTCAGAGGGAAGACTGAGTGGGATATAGGTGTGGCCAGAAAGTCTGTtaacaggaaaggaaaaattACACTCACCCCTGAGAATGGGTACTGGAGTGTGCTGCTGAGAAATAAGACAGAATATAAGGCTGGTGAACGTCCCCTTGTTCCCCTCTCCCTGAAACAGGCTCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGAAGGGTCTGGTCTCATTCTATGATGTTGAAGCCAAGTCTCACATCTACTCTTTCACTGGTCAGTGTTTTACTGAGGATCTCTATCCATACTTCAGCCCTGGCCCCAATGATAAAGGTAAAAACTCAGCACCACTGGTCATTATGCCTGCTAAACATTTTAAGAGATAGTTTCTTGAATAAAGCCAGCGGCCCAGCTTTGTCCTAAGCCGCAGTAAAGGTTCCTATCTAAAAGTTACTTCTTAAAACCTATTGATGAAATTCTTTTTCACAAGAATCAATATTCatgttttatgacattttaacaGTGATGACTGATATGGGAGTGGTTTGTTATAAATTTACAGTGCCTTAtcacaataaaaacattaataaaca

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70276 False 644 TUCP 0.42 2 4646456 4647880
XM_026947529.2 True 2020 mRNA 0.45 7 4642020 4647759

Neighbor

gene id symbol gene type direction distance location
LOC113547273 LOC108268233 coding downstream 1736 4634325 ~ 4640284 (-)
LOC113547217 LOC108268239 coding downstream 8755 4613028 ~ 4633265 (-)
LOC113547216 NA coding downstream 32458 4605172 ~ 4609562 (-)
maf1b maf1,LOC108268258 coding downstream 114913 4514603 ~ 4527107 (-)
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding downstream 357628 4269168 ~ 4284392 (-)
LOC113547271 LOC108268229 coding upstream 2814 4650694 ~ 4660380 (-)
LOC113547274 LOC108268240 coding upstream 15260 4663140 ~ 4672185 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding upstream 30859 4678739 ~ 4729122 (-)
nom1 nom1 coding upstream 110769 4758649 ~ 4769871 (-)
trnar-ucg_1 NA coding upstream 161912 4809792 ~ 4809864 (-)
LOC117597175 LOC108268239 non-coding downstream 45489 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 50252 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 81510 4559733 ~ 4560510 (-)
G59303 NA non-coding downstream 87111 4554700 ~ 4554909 (-)
G59287 NA non-coding downstream 154050 4486517 ~ 4487970 (-)
G59398 NA non-coding upstream 29285 4677165 ~ 4678736 (-)
G59416 NA non-coding upstream 109551 4757431 ~ 4757765 (-)
G59559 NA non-coding upstream 222280 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 309837 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 474256 5122136 ~ 5129619 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 70193 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 385736 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 431914 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 721889 3894592 ~ 3920131 (-)
si:ch73-174h16.4 LOC108268225 other downstream 1002812 3629988 ~ 3639208 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 280480 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 434928 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 830662 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1252369 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 2233502 6881382 ~ 6899227 (-)

Expression


Co-expression Network