G59416


Basic Information

Item Value
gene id G59416
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4757431 ~ 4757765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70306
cagaaagatagcagaaactttaggagggccaaatcaacaatttggtacattcttaaaaagaaggaatgcactggtgagctcggcaacaccaaaaggcctgggagaccacagaaaacaactaaagtggatgattgcagaattcttttcttattgaagaacaaccccttcacaacatctagccaagtcaggaacaatctggaggaggtaggcctatcattgtcaaagtctacaatcaagagccaccttcatgaatgtaaatacagacggtttacctcaagatgcaaaccgctggtaacactcaagaacacaaaggccagattagactttgctaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70306 True 335 lncRNA 0.41 1 4757431 4757765

Neighbor

gene id symbol gene type direction distance location
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 28309 4678739 ~ 4729122 (-)
LOC113547274 LOC108268240 coding downstream 85246 4663140 ~ 4672185 (-)
LOC113547271 LOC108268229 coding downstream 97051 4650694 ~ 4660380 (-)
LOC113547273 LOC108268233 coding downstream 117147 4634325 ~ 4640284 (-)
LOC113547217 LOC108268239 coding downstream 124166 4613028 ~ 4633265 (-)
nom1 nom1 coding upstream 884 4758649 ~ 4769871 (-)
trnar-ucg_1 NA coding upstream 52027 4809792 ~ 4809864 (-)
c8a c8a coding upstream 108716 4866481 ~ 4878229 (-)
LOC113547302 LOC108268221 coding upstream 203226 4960991 ~ 4973092 (-)
LOC113547301 LOC108268219 coding upstream 216497 4974262 ~ 4982521 (-)
G59398 NA non-coding downstream 78695 4677165 ~ 4678736 (-)
LOC117597175 LOC108268239 non-coding downstream 160900 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 165663 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 196921 4559733 ~ 4560510 (-)
G59303 NA non-coding downstream 202522 4554700 ~ 4554909 (-)
G59559 NA non-coding upstream 112395 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 199952 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 364371 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 421980 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 434395 5192160 ~ 5220686 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 109551 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 185604 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 501147 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 547325 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 837300 3894592 ~ 3920131 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 170595 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 325043 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 720777 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1142484 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 2123617 6881382 ~ 6899227 (-)

Expression


Co-expression Network